SMTL ID : 5bqs.1

S. Pneumoniae Fabh with small molecule inhibitor 4

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain A: I.232, D.233, S.235, I.237 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.237 NA.3: 4 residues within 4Å: Chain B: I.232, D.233, S.235, I.237 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.235

2 x 4VN: 1-{5-[2-chloro-5-(hydroxymethyl)phenyl]pyridin-2-yl}piperidine-4-carboxylic acid(Non-covalent)

4VN.2: 18 residues within 4Å: Chain A: R.36, T.37, C.111, L.155, F.156, L.188, M.211, G.213, V.216, A.220, H.248, A.250, N.251, R.253, I.254, N.278, F.310, G.311 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:T.37, A:L.188, A:V.216, A:V.216, A:A.250, A:F.310 Hydrogen bonds: A:R.36, A:N.251, A:N.278 Salt bridges: A:R.36, A:R.253 4VN.4: 17 residues within 4Å: Chain B: R.36, C.111, L.155, F.156, L.188, M.211, G.213, V.216, F.217, A.220, H.248, A.250, N.251, R.253, I.254, N.278, F.310 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:V.216, B:A.250 Water bridges: B:N.251 Salt bridges: B:R.36, B:R.253

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McKinney, D.C. et al., Antibacterial FabH Inhibitors with Mode of Action Validated in Haemophilus influenzae by in Vitro Resistance Mutation Mapping. Acs Infect Dis. (2016)

Release Date

2016-05-18

Peptides

3-oxoacyl-[acyl-carrier-protein] synthase 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3-oxoacyl-[acyl-carrier-protein] synthase 3