SMTL ID : 5br0.2 (1 other biounit)

Crystal structure of hemagglutinin of A/Taiwan/2/2013 (H6N1)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.39 Å

Oligo State

hetero-3-3-mer

Ligands

3 x NAG- NAG- BMA- MAN- MAN- FUC: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-FUC.1: 5 residues within 4Å: Chain B: E.147, E.150, N.154, T.156, K.161 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.161, B:E.147, B:E.147 NAG-NAG-BMA-MAN-MAN-FUC.6: 5 residues within 4Å: Chain D: E.147, E.150, N.154, T.156, K.161 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:K.161, D:E.147, D:E.147 NAG-NAG-BMA-MAN-MAN-FUC.11: 5 residues within 4Å: Chain F: E.147, E.150, N.154, T.156, K.161 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:K.161, F:E.147, F:E.147

12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain A: N.11 No protein-ligand interaction detected (PLIP) NAG.3: 2 residues within 4Å: Chain A: Q.15, N.23 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.15, A:N.23 NAG.4: 2 residues within 4Å: Chain A: N.167, T.240 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.167 NAG.5: 1 residues within 4Å: Chain A: N.291 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.291 NAG.7: 1 residues within 4Å: Chain C: N.11 No protein-ligand interaction detected (PLIP) NAG.8: 2 residues within 4Å: Chain C: Q.15, N.23 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Q.15, C:N.23 NAG.9: 2 residues within 4Å: Chain C: N.167, T.240 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.167 NAG.10: 1 residues within 4Å: Chain C: N.291 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.291 NAG.12: 1 residues within 4Å: Chain E: N.11 No protein-ligand interaction detected (PLIP) NAG.13: 2 residues within 4Å: Chain E: Q.15, N.23 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:Q.15, E:N.23 NAG.14: 2 residues within 4Å: Chain E: N.167, T.240 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.167 NAG.15: 1 residues within 4Å: Chain E: N.291 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.291

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ni, F. et al., Structural and Functional Studies of Influenza Virus A/H6 Hemagglutinin. Plos One (2015)

Release Date

2015-08-12

Peptides

HEMAGGLUTININ HA1 CHAIN: ACE
HEMAGGLUTININ HA2 CHAIN: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

C
C

E
C

B
D

D
D

F
D

HEMAGGLUTININ HA1 CHAIN

HEMAGGLUTININ HA2 CHAIN

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