SMTL ID : 5brt.2 (1 other biounit)

Crystal Structure of 2-hydroxybiphenyl 3-monooxygenase from Pseudomonas azelaica with 2-hydroxybiphenyl in the active site

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 24 residues within 4Å: Chain A: V.12, G.13, A.14, G.15, P.16, A.17, N.36, R.37, W.38, R.46, S.47, Q.120, T.142, E.143, Y.144, A.177, D.178, G.179, R.242, W.293, G.312, D.313, P.320, S.329 35 PLIP interactions: 35 interactions with chain A Hydrophobic interactions: A:R.46, A:W.293 Hydrogen bonds: A:A.14, A:G.15, A:A.17, A:R.37, A:R.37, A:W.38, A:Q.120, A:Q.120, A:Y.144, A:Y.144, A:R.242, A:D.313, A:S.329 Water bridges: A:A.14, A:G.18, A:N.36, A:N.36, A:N.36, A:S.42, A:R.46, A:R.46, A:R.46, A:S.47, A:S.47, A:S.47, A:H.48, A:A.180, A:D.313, A:A.314, A:A.314, A:H.318 pi-Stacking: A:W.293, A:W.293 FAD.3: 24 residues within 4Å: Chain B: V.12, G.13, A.14, G.15, P.16, A.17, N.36, R.37, W.38, R.46, S.47, Q.120, T.142, E.143, Y.144, A.177, D.178, G.179, R.242, W.293, G.312, D.313, P.320, S.329 38 PLIP interactions: 38 interactions with chain B Hydrophobic interactions: B:R.46, B:W.293 Hydrogen bonds: B:A.14, B:G.15, B:A.17, B:R.37, B:R.37, B:W.38, B:Q.120, B:Q.120, B:Y.144, B:Y.144, B:R.242, B:D.313, B:S.329 Water bridges: B:A.14, B:G.18, B:N.36, B:N.36, B:N.36, B:S.42, B:R.46, B:R.46, B:R.46, B:S.47, B:S.47, B:S.47, B:H.48, B:E.143, B:D.178, B:D.178, B:A.180, B:D.313, B:A.314, B:A.314, B:H.318 pi-Stacking: B:W.293, B:W.293 FAD.5: 27 residues within 4Å: Chain C: V.12, G.13, A.14, G.15, P.16, A.17, N.36, R.37, W.38, R.46, S.47, Q.120, T.142, E.143, Y.144, A.177, D.178, G.179, R.242, T.292, W.293, G.312, D.313, P.320, G.323, S.329 Ligands: CH9.6 27 PLIP interactions: 27 interactions with chain C Hydrophobic interactions: C:R.46, C:W.293 Hydrogen bonds: C:A.14, C:G.15, C:A.17, C:R.37, C:W.38, C:Q.120, C:Q.120, C:Y.144, C:Y.144, C:D.313, C:S.329 Water bridges: C:G.18, C:N.36, C:N.36, C:S.47, C:H.48, C:G.179, C:A.180, C:D.313, C:A.314, C:H.318, C:G.325 pi-Stacking: C:W.293, C:W.293, C:W.293 FAD.7: 27 residues within 4Å: Chain D: V.12, G.13, A.14, G.15, P.16, A.17, N.36, R.37, W.38, R.46, S.47, Q.120, T.142, E.143, Y.144, A.177, D.178, G.179, R.242, T.292, W.293, G.312, D.313, P.320, G.323, S.329 Ligands: CH9.8 29 PLIP interactions: 29 interactions with chain D Hydrophobic interactions: D:R.46, D:W.293 Hydrogen bonds: D:A.14, D:G.15, D:A.17, D:R.37, D:W.38, D:Q.120, D:Q.120, D:Y.144, D:Y.144, D:D.313, D:S.329 Water bridges: D:G.18, D:N.36, D:N.36, D:S.47, D:H.48, D:E.143, D:D.178, D:D.178, D:G.179, D:A.180, D:A.314, D:H.318, D:G.325 pi-Stacking: D:W.293, D:W.293, D:W.293

4 x CH9: 2-HYDROXYBIPHENYL(Non-covalent)

CH9.2: 12 residues within 4Å: Chain A: H.48, I.49, W.97, M.223, W.225, V.253, P.320, M.321, G.322, G.323, G.427, L.428 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.49, A:W.97, A:V.253, A:P.320, A:L.428 pi-Stacking: A:W.225 CH9.4: 12 residues within 4Å: Chain B: H.48, I.49, W.97, M.223, W.225, V.253, P.320, M.321, G.322, G.323, G.427, L.428 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:I.49, B:W.97, B:V.253, B:P.320, B:L.428 pi-Stacking: B:W.225 CH9.6: 11 residues within 4Å: Chain C: H.48, W.97, M.223, A.240, V.253, P.320, M.321, G.322, G.427, L.428 Ligands: FAD.5 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:W.97, C:A.240, C:V.253, C:P.320, C:L.428 CH9.8: 11 residues within 4Å: Chain D: H.48, W.97, M.223, A.240, V.253, P.320, M.321, G.322, G.427, L.428 Ligands: FAD.7 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:W.97, D:A.240, D:V.253, D:P.320, D:L.428

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kanteev, M. et al., A crystal structure of 2-hydroxybiphenyl 3-monooxygenase with bound substrate provides insights into the enzymatic mechanism. Biochim.Biophys.Acta (2015)

Release Date

2015-08-19

Peptides

2-hydroxybiphenyl-3-monooxygenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
B

D
B

2-hydroxybiphenyl-3-monooxygenase

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