SMTL ID : 5bsr.1

Crystal structure of 4-coumarate:CoA ligase complexed with adenosine monophosphate and Coenzyme A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x COA: COENZYME A(Non-covalent)

COA.1: 15 residues within 4Å: Chain A: L.110, L.233, P.234, H.237, Y.239, K.260, F.261, V.281, P.283, A.309, K.441, K.443, G.444, F.445, F.506 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:P.234, A:F.261, A:V.281, A:P.283, A:F.445 Hydrogen bonds: A:K.443, A:G.444 Water bridges: A:F.261, A:F.261, A:K.443, A:K.443 Salt bridges: A:K.260, A:K.443, A:K.443

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.2: 14 residues within 4Å: Chain A: A.309, A.310, P.311, G.332, Y.333, G.334, M.335, T.336, D.420, R.435, K.437, K.441, Q.446 Ligands: GOL.4 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:A.309, A:G.332, A:G.334, A:T.336, A:T.336, A:T.336, A:T.336, A:D.420, A:R.435, A:K.437 Water bridges: A:S.189, A:D.420, A:K.441, A:K.441 Salt bridges: A:K.441 pi-Stacking: A:Y.333

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 2 residues within 4Å: Chain A: Q.75, P.76 No protein-ligand interaction detected (PLIP) GOL.4: 8 residues within 4Å: Chain A: P.311, Q.331, G.358, A.359, C.360, F.431, I.432 Ligands: AMP.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.331, A:I.432 Water bridges: A:L.312, A:G.358, A:I.432 GOL.5: 1 residues within 4Å: Chain A: E.473 No protein-ligand interaction detected (PLIP) GOL.6: 7 residues within 4Å: Chain A: D.181, T.202, K.204, G.392, D.393, I.395, M.396 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.181, A:I.395, A:M.396 Water bridges: A:K.204, A:D.393

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Z. et al., Structural Basis for Specificity and Flexibility in a Plant 4-Coumarate:CoA Ligase. Structure (2015)

Release Date

2016-05-11

Peptides

4-coumarate--CoA ligase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

4-coumarate--CoA ligase 2

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