SMTL ID : 5bu6.1 (2 other biounits)

Structure of BpsB deaceylase domain from Bordetella bronchiseptica

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

3 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 4 residues within 4Å: Chain A: D.84, H.154, H.159 Ligands: SCN.4 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.84, A:H.154, A:H.159, H2O.1, H2O.1 NI.2: 3 residues within 4Å: Chain A: H.205, H.209 Ligands: SCN.6 No protein-ligand interaction detected (PLIP) NI.3: 5 residues within 4Å: Chain A: D.114, H.210 Ligands: SCN.5, SCN.6, SCN.7 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.210

4 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.4: 7 residues within 4Å: Chain A: H.154, H.159, P.221, Y.222, L.244, R.260 Ligands: NI.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.222, A:G.223, A:R.260 SCN.5: 5 residues within 4Å: Chain A: D.114, L.206, H.210 Ligands: NI.3, SCN.6 No protein-ligand interaction detected (PLIP) SCN.6: 5 residues within 4Å: Chain A: H.205, H.209 Ligands: NI.2, NI.3, SCN.5 No protein-ligand interaction detected (PLIP) SCN.7: 2 residues within 4Å: Chain A: H.210 Ligands: NI.3 1 PLIP interactions: 1 interactions with chain A Water bridges: A:W.137

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.8: 7 residues within 4Å: Chain A: S.59, M.60, Q.61, G.147, L.148, V.149, E.150 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:M.60, A:Q.61, A:L.148, A:E.150, A:R.216 Water bridges: A:E.150, A:E.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Little, D.J. et al., The Protein BpsB Is a Poly-beta-1,6-N-acetyl-d-glucosamine Deacetylase Required for Biofilm Formation in Bordetella bronchiseptica. J.Biol.Chem. (2015)

Release Date

2015-07-29

Peptides

BpsB (PgaB), Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BpsB (PgaB), Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase

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