SMTL ID : 5bud.2 (1 other biounit)

Crystal structure of Candida albicans Rai1 in complex with pU5-Mn2+

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

monomer

Ligands

1 x U- U- U- U- U: RNA (5'-R(P*UP*UP*UP*U)-3')(Non-covalent)

U-U-U-U-U.1: 22 residues within 4Å: Chain A: Q.148, R.160, Y.163, M.164, C.167, E.168, G.171, Y.172, E.175, D.226, E.245, L.246, K.247, T.248, R.250, N.254, Q.257, S.260, K.264, R.285 Ligands: MN.2, MN.3 Protein-ligand interaction information (PLIP) not available

3 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 5 residues within 4Å: Chain A: D.226, E.245, L.246 Ligands: U-U-U-U-U.1, MN.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.226, A:E.245, A:L.246, H2O.4 MN.3: 4 residues within 4Å: Chain A: E.224, D.226 Ligands: U-U-U-U-U.1, MN.2 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.226, H2O.3, H2O.5, H2O.14 MN.4: 2 residues within 4Å: Chain A: E.175, E.224 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.175, H2O.2, H2O.5, H2O.14, H2O.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, V.Y. et al., Structural and biochemical studies of the distinct activity profiles of Rai1 enzymes. Nucleic Acids Res. (2015)

Release Date

2015-07-08

Peptides

Decapping nuclease RAI1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Decapping nuclease RAI1

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