SMTL ID : 5bux.1

Crystal Structure of 3-hydroxyacyl-ACP dehydratase (FabZ) from Yersinia pestis with glycerol bound

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-hexamer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: H.34, E.83, A.86 Chain B: H.69 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:E.83 Water bridges: A:A.86, A:F.108, B:G.78 GOL.2: 5 residues within 4Å: Chain A: H.69, P.77, G.78 Chain B: H.34, E.83 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:G.78, B:E.83 Water bridges: B:Y.106 GOL.6: 4 residues within 4Å: Chain C: H.34, E.83, A.86 Chain D: H.69 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:E.83 Water bridges: C:A.86, C:F.108, D:G.78 GOL.7: 5 residues within 4Å: Chain C: H.69, P.77, G.78 Chain D: H.34, E.83 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:E.83, C:G.78 Water bridges: D:Y.106 GOL.11: 4 residues within 4Å: Chain E: H.34, E.83, A.86 Chain F: H.69 4 PLIP interactions: 3 interactions with chain E, 1 interactions with chain F Hydrogen bonds: E:E.83 Water bridges: E:A.86, E:F.108, F:G.78 GOL.12: 5 residues within 4Å: Chain E: H.69, P.77, G.78 Chain F: H.34, E.83 3 PLIP interactions: 2 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:E.83, E:G.78 Water bridges: F:Y.106

9 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.3: 1 residues within 4Å: Chain A: R.97 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.97, A:R.97 SCN.4: 1 residues within 4Å: Chain B: R.97 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.97, B:R.97 SCN.5: 4 residues within 4Å: Chain A: P.37, P.64 Chain B: P.37, P.64 No protein-ligand interaction detected (PLIP) SCN.8: 1 residues within 4Å: Chain C: R.97 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.97, C:R.97 SCN.9: 1 residues within 4Å: Chain D: R.97 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:R.97, D:R.97 SCN.10: 4 residues within 4Å: Chain C: P.37, P.64 Chain D: P.37, P.64 No protein-ligand interaction detected (PLIP) SCN.13: 1 residues within 4Å: Chain E: R.97 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:R.97, E:R.97 SCN.14: 1 residues within 4Å: Chain F: R.97 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:R.97, F:R.97 SCN.15: 4 residues within 4Å: Chain E: P.37, P.64 Chain F: P.37, P.64 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McGillick, B. et al., Crystal Structure of 3-hydroxyacyl-ACP dehydratase (FabZ) from Yersinia pestis with glycerol bound. To be Published

Release Date

2016-06-08

Peptides

3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ