SMTL ID : 5bv5.6 (7 other biounits)

Structure of CYP119 with T213A and C317H mutations

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-tetramer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: M.1, Y.2, D.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:M.1, A:M.1, A:Y.2, A:D.3, A:D.3 PO4.6: 2 residues within 4Å: Chain C: M.1, Y.2 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:M.1, C:Y.2

4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)

HEM.2: 19 residues within 4Å: Chain A: L.206, L.207, G.210, A.213, T.214, L.217, L.248, P.253, V.254, T.257, R.259, I.282, S.309, F.310, G.311, H.317, G.319, A.323 Ligands: PIM.3 14 PLIP interactions: 14 interactions with chain A, Hydrophobic interactions: A:A.213, A:L.217, A:L.248, A:V.254, A:V.254, A:I.282, A:F.310, A:A.323 Hydrogen bonds: A:G.311 Salt bridges: A:R.259, A:H.317 pi-Stacking: A:H.317, A:H.317 Metal complexes: A:H.317 HEM.4: 23 residues within 4Å: Chain B: L.33, H.76, L.79, F.87, L.207, G.210, N.211, A.213, T.214, L.217, P.253, V.254, T.257, R.259, I.282, S.309, F.310, G.311, S.312, H.315, H.317, A.323 Ligands: PIM.5 19 PLIP interactions: 19 interactions with chain B, Hydrophobic interactions: B:L.79, B:F.87, B:A.213, B:L.217, B:P.253, B:V.254, B:V.254, B:I.282, B:F.310, B:F.310, B:A.323 Hydrogen bonds: B:T.257, B:S.312 Salt bridges: B:H.76, B:R.259, B:H.315 pi-Stacking: B:H.317, B:H.317 Metal complexes: B:H.317 HEM.7: 17 residues within 4Å: Chain C: L.207, G.210, N.211, A.213, T.214, L.217, P.253, V.254, T.257, R.259, S.309, F.310, G.311, S.312, H.317, G.319, A.323 11 PLIP interactions: 10 interactions with chain C, 1 Ligand-Water interactions, Hydrophobic interactions: C:A.213, C:L.217, C:V.254, C:V.254, C:F.310, C:A.323 Hydrogen bonds: C:S.312 Salt bridges: C:R.259, C:H.317 Metal complexes: C:H.317, H2O.1 HEM.8: 22 residues within 4Å: Chain D: L.33, S.41, H.76, L.79, L.207, G.210, N.211, A.213, T.214, L.217, P.253, V.254, T.257, R.259, I.282, S.309, F.310, G.311, S.312, H.317, A.323 Ligands: PIM.9 14 PLIP interactions: 14 interactions with chain D, Hydrophobic interactions: D:L.79, D:A.213, D:L.217, D:P.253, D:V.254, D:I.282, D:F.310, D:A.323 Hydrogen bonds: D:S.41, D:T.257, D:S.312 Salt bridges: D:H.76, D:R.259 Metal complexes: D:H.317

3 x PIM: 4-PHENYL-1H-IMIDAZOLE(Non-covalent)

PIM.3: 6 residues within 4Å: Chain A: G.210, A.213, V.254, H.317, L.354 Ligands: HEM.2 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.254, A:L.354 PIM.5: 6 residues within 4Å: Chain B: G.210, A.213, V.254, H.317, L.354 Ligands: HEM.4 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:L.354 PIM.9: 6 residues within 4Å: Chain D: G.210, A.213, V.254, H.317, L.354 Ligands: HEM.8 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:V.254, D:L.354

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McIntosh, J.A. et al., Structural Adaptability Facilitates Histidine Heme Ligation in a Cytochrome P450. J.Am.Chem.Soc. (2015)

Release Date

2016-02-03

Peptides

Cytochrome P450 119: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
A

D
D

Cytochrome P450 119

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