SMTL ID : 5bvb.6 (5 other biounits)

Engineered Digoxigenin binder DIG5.1a

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

homo-dimer

Ligands

2 x DOG: DIGOXIGENIN(Non-covalent)

DOG.1: 20 residues within 4Å: Chain A: L.10, L.14, L.17, W.25, Y.37, H.57, M.58, H.61, V.65, W.67, F.69, Y.87, Y.100, A.102, Y.104, T.106, L.118, V.120, W.122, I.127 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.37, A:W.67, A:F.69, A:Y.100, A:Y.104, A:W.122 Hydrogen bonds: A:Y.37, A:Y.87, A:Y.104, A:Y.104 DOG.2: 18 residues within 4Å: Chain B: L.14, L.17, W.25, L.35, Y.37, M.58, H.61, V.65, W.67, F.69, Y.87, A.102, Y.104, T.106, L.118, V.120, W.122, I.127 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:Y.37, B:W.67, B:Y.104, B:W.122 Hydrogen bonds: B:Y.37, B:Y.87, B:Y.104, B:Y.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, R.D. et al., CSAR Benchmark Exercise 2013: Evaluation of Results from a Combined Computational Protein Design, Docking, and Scoring/Ranking Challenge. J.Chem.Inf.Model. (2016)

Release Date

2015-10-28

Peptides

DIG5.1a: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

DIG5.1a

Related Entries With Identical Sequence