SMTL ID : 5bwd.1

Benzylsuccinate alpha-gamma bound to fumarate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x FUM: FUMARIC ACID(Non-covalent)

FUM.1: 10 residues within 4Å: Chain A: L.491, C.492, M.493, S.494, R.507, G.511, G.512, W.612, N.614, Q.706 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.491, A:L.491, A:W.612 Hydrogen bonds: A:L.491, A:C.492, A:M.493, A:S.494, A:G.512, A:N.614, A:Q.706 Salt bridges: A:R.507

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 6 residues within 4Å: Chain A: R.45, F.114, E.286, K.306, M.353, E.360 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.45, A:E.286, A:E.289, A:K.306, A:E.360 Water bridges: A:E.360

5 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.3: 6 residues within 4Å: Chain A: D.228, N.242, K.245, W.249, E.597, L.598 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.245 Water bridges: A:K.245, A:L.598 PGE.4: 7 residues within 4Å: Chain A: D.228, T.231, P.233, W.234, N.235, K.238, G.239 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.231 PGE.5: 7 residues within 4Å: Chain A: L.474, N.475, M.600, A.604, L.605, S.606, Y.696 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.606, A:Y.696 Water bridges: A:Q.580 PGE.6: 6 residues within 4Å: Chain A: G.476, N.477, G.478, A.479, T.480, D.481 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.481 Water bridges: A:G.478 PGE.8: 4 residues within 4Å: Chain A: H.355, K.438, W.442, E.445 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.355, A:K.438, A:E.445

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.7: 6 residues within 4Å: Chain A: T.79, K.83, E.152, A.155, I.156, Y.159 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.83, A:E.152, A:E.152

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Funk, M.A. et al., Substrate-bound Structures of Benzylsuccinate Synthase Reveal How Toluene Is Activated in Anaerobic Hydrocarbon Degradation. J.Biol.Chem. (2015)

Release Date

2015-08-05

Peptides

benzylsuccinate synthase alpha chain: A
benzylsuccinate synthase gamma chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

benzylsuccinate synthase alpha chain

benzylsuccinate synthase gamma chain

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