SMTL ID : 5bwe.1 (2 other biounits)

Benzylsuccinate synthase alpha-beta-gamma complex with bound toluene and fumarate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-2-2-2-mer

Ligands

2 x FUM: FUMARIC ACID(Non-covalent)

FUM.1: 12 residues within 4Å: Chain A: L.491, C.492, M.493, S.494, R.507, G.510, G.511, G.512, W.612, N.614, Q.706 Ligands: MBN.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.491, A:W.612 Hydrogen bonds: A:L.491, A:C.492, A:M.493, A:S.494, A:G.512, A:N.614, A:Q.706, A:Q.706 Salt bridges: A:R.507 FUM.4: 11 residues within 4Å: Chain D: L.491, C.492, M.493, S.494, R.507, G.511, G.512, W.612, N.614, Q.706 Ligands: MBN.5 11 PLIP interactions: 11 interactions with chain D Hydrophobic interactions: D:L.491, D:L.491, D:W.612 Hydrogen bonds: D:L.491, D:C.492, D:M.493, D:S.494, D:G.512, D:N.614, D:Q.706 Salt bridges: D:R.507

2 x MBN: TOLUENE(Non-covalent)

MBN.2: 14 residues within 4Å: Chain A: E.188, Y.196, I.383, F.384, L.390, L.491, C.492, R.507, S.513, N.614, Q.706, V.708, L.710 Ligands: FUM.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.196, A:I.383, A:F.384, A:V.708, A:V.708, A:L.710 MBN.5: 14 residues within 4Å: Chain D: E.188, Y.196, I.383, F.384, L.390, L.491, C.492, R.507, S.513, N.614, Q.706, V.708, L.710 Ligands: FUM.4 8 PLIP interactions: 8 interactions with chain D Hydrophobic interactions: D:Y.196, D:I.383, D:F.384, D:L.390, D:L.491, D:V.708, D:V.708, D:L.710

2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.3: 11 residues within 4Å: Chain B: P.16, C.26, C.29, W.31, Q.32, C.44, A.46, T.66, C.67, R.69, H.70 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.26, B:C.29, B:C.44, B:C.67 SF4.6: 10 residues within 4Å: Chain E: P.16, C.26, C.29, W.31, Q.32, C.44, A.46, C.67, R.69, H.70 4 PLIP interactions: 4 interactions with chain E, Metal complexes: E:C.26, E:C.29, E:C.44, E:C.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Funk, M.A. et al., Substrate-bound Structures of Benzylsuccinate Synthase Reveal How Toluene Is Activated in Anaerobic Hydrocarbon Degradation. J.Biol.Chem. (2015)

Release Date

2015-08-05

Peptides

benzylsuccinate synthase alpha chain: AD
benzylsuccinate synthase beta chain: BE
benzylsuccinate synthase gamma chain: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

B
B

E
F

C
C

F
G

benzylsuccinate synthase alpha chain

benzylsuccinate synthase beta chain

benzylsuccinate synthase gamma chain

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