SMTL ID : 5bxs.1 (1 other biounit)

LNBase in complex with LNB-NHAcCAS

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x GAL: beta-D-galactopyranose(Non-covalent)

GAL.1: 12 residues within 4Å: Chain A: C.168, C.170, Q.171, E.197, N.240, H.244, D.301, W.446, P.447, D.448, L.555 Ligands: GC2.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.171, A:N.240, A:D.301, A:D.448 Water bridges: A:E.197

1 x GC2: 6-ACETAMIDO-6-DEOXY-CASTANOSPERMINE

GC2.2: 10 residues within 4Å: Chain A: H.244, D.301, E.302, W.354, W.375, Y.400, Y.408, W.446, D.448 Ligands: GAL.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:D.301, A:W.354, A:Y.400, A:Y.408 Hydrogen bonds: A:D.301, A:D.301, A:Y.400, A:D.448 Salt bridges: A:E.302

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: S.404, A.405, Q.406, V.407 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.404, A:Q.406, A:V.407

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hattie, M. et al., Gaining insight into the catalysis by GH20 lacto-N-biosidase using small molecule inhibitors and structural analysis. Chem.Commun.(Camb.) (2015)

Release Date

2015-09-09

Peptides

Lacto-N-biosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lacto-N-biosidase

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