SMTL ID : 5bzi.1

Crystal structure of the murine cd44 hyaluronan binding domain complex with a small molecule

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.32 Å

Oligo State

monomer

Ligands

1 x 4WU: 1,2,3,4-tetrahydroisoquinolin-8-amine(Non-covalent)

4WU.1: 8 residues within 4Å: Chain A: N.7, V.8, T.9, E.19, V.131, N.132, R.133 Ligands: GOL.3 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:N.7, A:R.133 Hydrogen bonds: A:V.8, A:E.19 pi-Cation interactions: A:R.133

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 7 residues within 4Å: Chain A: C.10, C.112, T.113, S.114, N.132, R.133, D.134 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.133, A:D.134 Salt bridges: A:D.134

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: D.5, N.7, N.21, G.22, V.131, R.137 Ligands: 4WU.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.7 Water bridges: A:G.22, A:R.137 GOL.4: 6 residues within 4Å: Chain A: Y.24, C.59, I.70, I.78, C.79, A.80 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.24, A:A.80 GOL.5: 2 residues within 4Å: Chain A: A.104, S.105 No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 6 residues within 4Å: Chain A: R.11, F.16, F.38, S.40, N.103, V.115 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.40, A:N.103 Water bridges: A:R.11 Salt bridges: A:R.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, L.K. et al., Crystal structure of the murine cd44 hyaluronan binding domain complex with a small molecule. To Be Published

Release Date

2016-06-29

Peptides

CD44 antigen: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CD44 antigen

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