SMTL ID : 5c1z.1 (1 other biounit)

Parkin (UblR0RBR)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.90, C.94, C.152, H.155 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.90, A:C.94, A:C.152, A:H.155 ZN.2: 4 residues within 4Å: Chain A: C.106, C.109, C.136, C.141 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.106, A:C.109, A:C.136, A:C.141 ZN.3: 4 residues within 4Å: Chain A: C.178, C.181, C.200, C.203 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.178, A:C.181, A:C.200, A:C.203 ZN.4: 4 residues within 4Å: Chain A: C.193, H.197, C.229, C.233 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.193, A:H.197, A:C.229, A:C.233 ZN.5: 4 residues within 4Å: Chain A: C.272, C.277, C.292, G.301 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.272, A:C.292 ZN.6: 4 residues within 4Å: Chain A: C.305, C.308, H.313, C.317 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.305, A:C.308, A:H.313, A:C.317 ZN.7: 4 residues within 4Å: Chain A: C.358, C.361, C.376, C.381 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.358, A:C.361, A:C.376, A:C.381 ZN.8: 4 residues within 4Å: Chain A: C.386, C.389, C.397, H.401 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.386, A:C.389, A:C.397, A:H.401

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.9: 5 residues within 4Å: Chain A: K.101, R.103, K.151, T.157, R.395 11 PLIP interactions: 11 interactions with chain A Water bridges: A:K.101, A:K.101, A:R.103, A:K.151, A:K.151, A:R.395, A:R.395 Salt bridges: A:K.101, A:R.103, A:K.151, A:R.395

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.10: 6 residues within 4Å: Chain A: V.126, L.127, P.129, A.146, E.147, F.148 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:F.148, A:F.148 Water bridges: A:N.130, A:N.130, A:E.147, A:E.147 GOL.11: 7 residues within 4Å: Chain A: H.167, A.170, V.190, Q.192, R.196, W.343, V.405 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.167, A:Q.192, A:R.196 Water bridges: A:E.344

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.12: 5 residues within 4Å: Chain A: F.86, Y.87, W.123, L.166, I.169 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, A. et al., Disruption of the autoinhibited state primes the E3 ligase parkin for activation and catalysis. Embo J. (2015)

Release Date

2015-07-29

Peptides

E3 ubiquitin-protein ligase parkin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase parkin

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