- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- hetero-2-2-2-mer
- Ligands
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 12 x CA: CALCIUM ION(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
ZN.4: 3 residues within 4Å:- Chain A: C.276, H.560
- Ligands: HEC.5
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:C.276, A:H.560, H2O.3
ZN.22: 3 residues within 4Å:- Chain D: C.276, H.560
- Ligands: HEC.23
3 PLIP interactions:2 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:C.276, D:H.560, H2O.14
- 8 x HEC: HEME C(Covalent)
HEC.5: 20 residues within 4Å:- Chain A: R.250, P.271, N.275, C.276, W.431, H.448, M.529, Q.540, T.541, A.542, L.543, T.544, R.554, I.555, C.556, G.558, C.559, H.560, Y.564
- Ligands: ZN.4
14 PLIP interactions:14 interactions with chain A,- Hydrophobic interactions: A:P.271, A:W.431, A:H.448, A:R.554, A:H.560, A:Y.564, A:Y.564
- Hydrogen bonds: A:N.275
- Water bridges: A:N.275
- Salt bridges: A:R.250, A:H.448, A:H.560
- pi-Stacking: A:Y.564
- Metal complexes: A:Y.564
HEC.6: 17 residues within 4Å:- Chain A: K.657, C.658, C.661, H.662, N.666, P.668, Y.707, L.718, R.721, R.733, P.738, G.741, R.742, L.743, H.745, F.748, L.749
13 PLIP interactions:13 interactions with chain A,- Hydrophobic interactions: A:Y.707, A:Y.707, A:L.718, A:F.748, A:F.748, A:L.749
- Hydrogen bonds: A:Y.707, A:L.743
- Salt bridges: A:R.721, A:R.733, A:H.745
- Metal complexes: A:H.662, A:H.745
HEC.16: 22 residues within 4Å:- Chain C: Y.61, S.62, C.63, C.66, H.67, W.78, L.80, E.83, K.89, N.90, K.92, F.103, R.104, H.105, L.122, V.125, C.126, D.129, V.133, F.134, L.147, I.151
18 PLIP interactions:17 interactions with chain C, 1 Ligand-Water interactions,- Hydrophobic interactions: C:Y.61, C:K.92, C:L.122, C:V.125, C:D.129, C:V.133, C:F.134, C:F.134, C:L.147, C:I.151
- Hydrogen bonds: C:R.104
- Water bridges: C:E.106
- Salt bridges: C:K.89, C:K.92, C:R.104, C:H.105
- Metal complexes: C:H.67, H2O.12
HEC.17: 19 residues within 4Å:- Chain C: V.184, G.185, C.186, C.189, H.190, H.207, V.209, T.211, F.256, T.258, P.259, L.261, I.264, Y.270, F.271, H.272, H.293, G.294, T.296
20 PLIP interactions:20 interactions with chain C,- Hydrophobic interactions: C:V.184, C:H.207, C:T.258, C:P.259, C:L.261, C:I.264, C:I.264, C:Y.270, C:F.271, C:F.271, C:T.296
- Hydrogen bonds: C:T.211, C:F.271, C:H.272
- Water bridges: C:K.92, C:S.267
- Salt bridges: C:H.272
- pi-Cation interactions: C:H.293
- Metal complexes: C:H.190, C:H.293
HEC.23: 20 residues within 4Å:- Chain D: R.250, P.271, N.275, C.276, W.431, I.432, H.448, M.529, I.531, Q.540, T.541, A.542, L.543, T.544, R.554, C.556, C.559, H.560, Y.564
- Ligands: ZN.22
17 PLIP interactions:17 interactions with chain D,- Hydrophobic interactions: D:P.271, D:W.431, D:H.448, D:I.531, D:L.543, D:T.544, D:R.554, D:Y.564
- Hydrogen bonds: D:N.275
- Water bridges: D:R.250, D:N.275
- Salt bridges: D:R.250, D:H.448, D:H.560
- pi-Stacking: D:Y.564
- pi-Cation interactions: D:H.560
- Metal complexes: D:Y.564
HEC.24: 18 residues within 4Å:- Chain D: K.657, C.658, M.660, C.661, H.662, N.666, Y.707, L.718, R.721, L.722, R.733, P.738, G.741, R.742, L.743, H.745, F.748, L.749
16 PLIP interactions:16 interactions with chain D,- Hydrophobic interactions: D:Y.707, D:Y.707, D:L.718, D:F.748, D:F.748, D:F.748, D:F.748, D:L.749
- Hydrogen bonds: D:G.741, D:L.743
- Water bridges: D:R.721
- Salt bridges: D:R.721, D:R.733, D:H.745
- Metal complexes: D:H.662, D:H.745
HEC.32: 20 residues within 4Å:- Chain F: Y.61, S.62, C.63, C.66, H.67, W.78, K.89, N.90, K.92, I.94, F.103, R.104, H.105, L.122, V.125, C.126, D.129, V.133, F.134, L.147
20 PLIP interactions:19 interactions with chain F, 1 Ligand-Water interactions,- Hydrophobic interactions: F:Y.61, F:K.89, F:K.92, F:I.94, F:R.104, F:L.122, F:V.125, F:D.129, F:V.133, F:F.134, F:F.134, F:L.147
- Hydrogen bonds: F:R.104, F:H.105
- Salt bridges: F:K.89, F:K.92, F:R.104, F:H.105
- Metal complexes: F:H.67, H2O.19
HEC.33: 21 residues within 4Å:- Chain F: G.185, C.186, E.188, C.189, H.190, H.207, V.209, T.211, F.256, T.258, P.259, L.261, I.264, Y.270, F.271, H.272, T.282, M.292, H.293, T.296, L.311
15 PLIP interactions:15 interactions with chain F,- Hydrophobic interactions: F:V.209, F:V.209, F:L.261, F:F.271, F:T.282, F:T.296, F:L.311
- Hydrogen bonds: F:T.211, F:F.271, F:H.272
- Water bridges: F:T.260, F:S.267
- Salt bridges: F:H.272
- Metal complexes: F:H.190, F:H.293
- 7 x BET: TRIMETHYL GLYCINE(Non-covalent)
BET.7: 4 residues within 4Å:- Chain A: Y.510, Y.605, G.607, V.608
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:V.608
- pi-Cation interactions: A:Y.510
BET.8: 4 residues within 4Å:- Chain A: R.58, N.74, F.76, A.77
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.58
BET.9: 3 residues within 4Å:- Chain A: E.724, F.737, R.742
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.742
BET.12: 6 residues within 4Å:- Chain B: H.187, E.188, R.243, R.302
- Chain C: V.241, E.242
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain C- Water bridges: B:R.243
- Salt bridges: B:R.243, B:R.302, C:E.242
BET.18: 2 residues within 4Å:- Chain C: H.207, D.208
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:D.208
- Salt bridges: C:H.207
BET.25: 5 residues within 4Å:- Chain D: G.56, R.58, N.74, F.76, A.77
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:N.74
- Salt bridges: D:R.58
BET.28: 5 residues within 4Å:- Chain E: H.187, E.188, R.243, R.302
- Chain F: E.242
4 PLIP interactions:1 interactions with chain F, 3 interactions with chain E- Salt bridges: F:E.242, E:E.188, E:R.243, E:R.302
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.10: 2 residues within 4Å:- Chain A: N.263
- Chain B: E.219
5 PLIP interactions:5 Ligand-Water interactions- Metal complexes: H2O.6, H2O.6, H2O.7, H2O.7, H2O.8
MG.26: 2 residues within 4Å:- Chain D: N.263
- Chain E: E.219
5 PLIP interactions:1 interactions with chain E, 4 Ligand-Water interactions- Metal complexes: E:E.219, H2O.16, H2O.17, H2O.17, H2O.18
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dietl, A. et al., The inner workings of the hydrazine synthase multiprotein complex. Nature (2015)
- Release Date
- 2015-10-14
- Peptides
- HYDRAZINE SYNTHASE ALPHA SUBUNIT: AD
HYDRAZINE SYNTHASE BETA SUBUNIT: BE
HYDRAZINE SYNTHASE GAMMA SUBUNIT: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
DB
BE
EC
CF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- hetero-2-2-2-mer
- Ligands
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 12 x CA: CALCIUM ION(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
- 8 x HEC: HEME C(Covalent)
- 7 x BET: TRIMETHYL GLYCINE(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dietl, A. et al., The inner workings of the hydrazine synthase multiprotein complex. Nature (2015)
- Release Date
- 2015-10-14
- Peptides
- HYDRAZINE SYNTHASE ALPHA SUBUNIT: AD
HYDRAZINE SYNTHASE BETA SUBUNIT: BE
HYDRAZINE SYNTHASE GAMMA SUBUNIT: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
DB
BE
EC
CF
F