SMTL ID : 5c5o.2 (2 other biounits)

Structure of SARS-3CL protease complex with a phenyl-beta-alanyl (S,R)-N-decalin type inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x SDJ: (2S)-3-(1H-imidazol-5-yl)-2-({[(3S,4aR,8aS)-2-(N-phenyl-beta-alanyl)decahydroisoquinolin-3-yl]methyl}amino)propanal(Non-covalent)

SDJ.1: 18 residues within 4Å: Chain A: T.25, H.41, C.44, T.45, A.46, M.49, F.140, L.141, N.142, G.143, S.144, C.145, H.163, H.164, E.166, D.187, I.188, Q.189 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:H.41, A:A.46 Hydrogen bonds: A:N.142, A:G.143, A:C.145 Water bridges: A:E.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shimamoto, Y. et al., Fused-ring structure of N-decalin as a novel scaffold for SARS 3CL protease inhibitors. to be published

Release Date

2016-06-22

Peptides

3C-like proteinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

3C-like proteinase

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