SMTL ID : 5c6u.1

Rv3722c aminotransferase from Mycobacterium tuberculosis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

homo-dimer

Ligands

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)

PLP.1: 15 residues within 4Å: Chain A: S.98, S.99, L.100, Y.138, V.183, N.188, D.217, A.219, Y.220, S.253, S.255, K.256 Chain B: Y.68, I.286 Ligands: PO4.2 17 PLIP interactions: 16 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:Y.138, A:V.183, A:A.219 Hydrogen bonds: A:S.99, A:L.100, A:N.188, A:D.217, A:Y.220, A:S.253, A:S.255, A:S.255, A:K.256, B:Y.68 Water bridges: A:S.99, A:S.99, A:S.99 pi-Stacking: A:Y.138 PLP.4: 15 residues within 4Å: Chain A: Y.68, I.286 Chain B: S.98, S.99, L.100, Y.138, V.183, N.188, D.217, A.219, Y.220, S.253, S.255, K.256 Ligands: PO4.5 17 PLIP interactions: 1 interactions with chain A, 16 interactions with chain B Hydrogen bonds: A:Y.68, B:S.99, B:L.100, B:N.188, B:D.217, B:S.253, B:S.255, B:S.255, B:K.256 Hydrophobic interactions: B:Y.138, B:V.183, B:A.219 Water bridges: B:S.99, B:S.99, B:S.99, B:Y.138 pi-Stacking: B:Y.138

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 7 residues within 4Å: Chain A: S.98, S.99, L.100, S.253, S.255 Chain B: Y.68 Ligands: PLP.1 10 PLIP interactions: 9 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.99, A:S.99, A:L.100, A:S.253, A:S.255, A:S.255, B:Y.68 Water bridges: A:S.99, A:S.99, A:S.99 PO4.5: 7 residues within 4Å: Chain A: Y.68 Chain B: S.98, S.99, L.100, S.253, S.255 Ligands: PLP.4 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:S.99, B:S.99, B:L.100, B:S.253, B:S.255, B:S.255 Water bridges: B:S.99, B:S.99, B:S.99

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: G.137, Y.138, H.141, W.181 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain B: G.137, Y.138, H.141, W.181 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

OSIPIUK, J. et al., Rv3722c aminotransferase from Mycobacterium tuberculosis. to be published

Release Date

2015-07-15

Peptides

Aminotransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Aminotransferase