SMTL ID : 5c81.1

ZHD-Intermediate complex after ZHD crystal soaking in ZEN for 12min

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x ZFR: (1E,10S)-1-(3,5-dihydroxyphenyl)-10-hydroxyundec-1-en-6-one(Non-covalent)

ZFR.1: 16 residues within 4Å: Chain A: D.31, G.32, L.33, S.102, P.128, K.130, L.132, L.135, M.154, W.183, Y.187, P.188, I.191, P.192, H.242, F.243 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:D.31, A:L.33, A:P.128, A:P.128, A:L.135, A:W.183, A:P.188, A:P.192, A:F.243 Hydrogen bonds: A:G.32, A:S.102, A:S.102, A:L.132 Water bridges: A:L.132, A:P.188 ZFR.5: 16 residues within 4Å: Chain B: D.31, G.32, S.102, P.128, K.130, L.132, L.135, M.154, V.158, W.183, Y.187, P.188, I.191, P.192, H.242, F.243 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:D.31, B:P.128, B:P.128, B:V.158, B:W.183, B:P.188, B:P.192, B:F.243 Hydrogen bonds: B:G.32, B:S.102, B:S.102, B:L.132 Water bridges: B:L.132, B:P.188

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: Q.78, P.193, S.194, A.195, P.196, Q.198 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.78 Water bridges: A:P.193, A:Q.198, A:Q.198

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 3 residues within 4Å: Chain A: E.70, E.74, K.79 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.74, A:E.74

2 x K: POTASSIUM ION(Non-covalent)

K.4: 4 residues within 4Å: Chain A: H.248, P.249, D.250, V.251 No protein-ligand interaction detected (PLIP) K.6: 4 residues within 4Å: Chain B: H.248, P.249, D.250, V.251 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ming, D.-M. et al., A Case Study of Lactonase ZHD. To Be Published

Release Date

2016-06-29

Peptides

Zearalenone hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Zearalenone hydrolase

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