SMTL ID : 5cb2.1

the structure of candida albicans Sey1p in complex with GMPPNP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: S.72, T.95, D.123 Ligands: GNP.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:S.72, A:T.95 MG.3: 4 residues within 4Å: Chain B: S.72, T.95, D.123 Ligands: GNP.4 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:S.72, B:T.95

2 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.2: 21 residues within 4Å: Chain A: Q.67, S.68, T.69, G.70, K.71, S.72, T.73, D.84, V.85, M.86, E.88, Q.93, T.94, T.95, G.126, W.158, R.204, D.205, H.254, K.255 Ligands: MG.1 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:S.68, A:T.69, A:T.69, A:G.70, A:K.71, A:K.71, A:K.71, A:S.72, A:T.73, A:D.84, A:M.86, A:M.86, A:E.88, A:T.94, A:T.95, A:G.126, A:R.204, A:D.205, A:H.254, A:K.255, A:K.255 Salt bridges: A:D.205 pi-Stacking: A:W.158 GNP.4: 21 residues within 4Å: Chain B: Q.67, S.68, T.69, G.70, K.71, S.72, T.73, D.84, V.85, M.86, E.88, Q.93, T.94, T.95, G.126, W.158, R.204, D.205, H.254, K.255 Ligands: MG.3 23 PLIP interactions: 23 interactions with chain B Hydrogen bonds: B:S.68, B:T.69, B:T.69, B:G.70, B:K.71, B:K.71, B:K.71, B:S.72, B:T.73, B:D.84, B:M.86, B:M.86, B:E.88, B:T.94, B:T.95, B:G.126, B:R.204, B:D.205, B:H.254, B:K.255, B:K.255 Salt bridges: B:D.205 pi-Stacking: B:W.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yan, L. et al., Structures of the yeast dynamin-like GTPase Sey1p provide insight into homotypic ER fusion. J.Cell Biol. (2015)

Release Date

2015-09-23

Peptides

Protein SEY1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protein SEY1

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