SMTL ID : 5cb6.3 (3 other biounits)

Structure of adenosine-5'-phosphosulfate kinase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.79 Å

Oligo State

homo-dimer

Ligands

2 x ADX: ADENOSINE-5'-PHOSPHOSULFATE(Non-covalent)

ADX.1: 20 residues within 4Å: Chain A: S.34, G.61, D.62, R.65, F.74, R.79, N.82, I.83, A.104, I.105, S.106, P.107, K.140, L.142, I.151, K.152, G.153, F.154, T.155 Ligands: ANP.2 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:R.79, A:R.79, A:N.82, A:I.105, A:S.106, A:K.140, A:G.153, A:T.155 Water bridges: A:K.140 Salt bridges: A:R.65, A:R.65, A:R.79 pi-Stacking: A:F.74, A:F.74, A:F.154 ADX.5: 20 residues within 4Å: Chain B: S.34, G.61, D.62, R.65, F.74, R.79, N.82, I.83, A.104, I.105, S.106, P.107, K.140, L.142, I.151, K.152, G.153, F.154, T.155 Ligands: ANP.6 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:R.79, B:R.79, B:N.82, B:I.105, B:S.106, B:K.140, B:G.153, B:T.155, B:T.155 Water bridges: B:K.140 Salt bridges: B:R.65, B:R.65, B:R.79 pi-Stacking: B:F.74, B:F.74, B:F.154

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 18 residues within 4Å: Chain A: L.33, S.34, G.35, A.36, G.37, K.38, T.39, T.40, D.62, R.137, V.139, K.140, T.173, E.176, L.178, S.181 Ligands: ADX.1, MG.3 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:G.35, A:A.36, A:G.37, A:K.38, A:K.38, A:K.38, A:T.39, A:T.40, A:T.40, A:D.62, A:D.62, A:R.137, A:K.140, A:S.181, A:S.181 Water bridges: A:E.176 ANP.6: 18 residues within 4Å: Chain B: L.33, S.34, G.35, A.36, G.37, K.38, T.39, T.40, D.62, R.137, V.139, K.140, T.173, E.176, L.178, S.181 Ligands: ADX.5, MG.7 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:G.35, B:A.36, B:G.37, B:K.38, B:K.38, B:K.38, B:T.39, B:T.40, B:T.40, B:D.62, B:R.137, B:K.140, B:S.181, B:S.181 Water bridges: B:E.176

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: T.39, D.60, D.62 Ligands: ANP.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.39, A:D.60 MG.7: 4 residues within 4Å: Chain B: T.39, D.60, D.62 Ligands: ANP.6 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:T.39, B:D.60

2 x CAC: CACODYLATE ION(Non-covalent)

CAC.4: 1 residues within 4Å: Chain A: D.158 No protein-ligand interaction detected (PLIP) CAC.8: 1 residues within 4Å: Chain B: D.158 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Herrmann, J. et al., Recapitulating the Structural Evolution of Redox Regulation in Adenosine 5'-Phosphosulfate Kinase from Cyanobacteria to Plants. J.Biol.Chem. (2015)

Release Date

2015-08-26

Peptides

Probable adenylyl-sulfate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
C

Probable adenylyl-sulfate kinase

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