SMTL ID : 5ccv.6 (13 other biounits)

Crystal structure of full-length NS5 from dengue virus type 3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.60 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.712, H.714, C.728, C.841 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.712, A:H.714, A:C.728, A:C.841 ZN.2: 5 residues within 4Å: Chain A: E.437, H.441, C.446, G.447, C.449 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.437, A:H.441, A:C.446, A:C.449

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.3: 20 residues within 4Å: Chain A: S.56, G.58, S.59, G.81, C.82, G.83, R.84, G.85, G.86, W.87, T.104, K.105, H.110, E.111, K.130, D.131, V.132, F.133, D.146, I.147 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:S.56, A:G.85, A:G.86, A:W.87, A:W.87, A:W.87, A:K.105, A:H.110, A:E.111, A:D.131, A:V.132

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Klema, V.J. et al., Dengue Virus Nonstructural Protein 5 (NS5) Assembles into a Dimer with a Unique Methyltransferase and Polymerase Interface. Plos Pathog. (2016)

Release Date

2016-02-03

Peptides

RNA-directed RNA polymerase NS5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

RNA-directed RNA polymerase NS5

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