SMTL ID : 5cdp.1

2.45A structure of etoposide with S.aureus DNA gyrase and DNA

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.45 Å
Oligo State
hetero-oligomer
Ligands
2 x DA- DG- DC- DC- DG- DT- DA- DG: DNA (5'-D(*AP*GP*CP*CP*GP*TP*AP*G*GP*GP*TP*AP*CP*CP*TP*AP*CP*GP*GP*CP*T)-3')(Non-covalent)
2 x NA: SODIUM ION(Non-functional Binders)
3 x MN: MANGANESE (II) ION(Non-covalent)
1 x EVP: (5S,5aR,8aR,9R)-9-(4-hydroxy-3,5-dimethoxyphenyl)-8-oxo-5,5a,6,8,8a,9-hexahydrofuro[3',4':6,7]naphtho[2,3-d][1,3]dioxol-5-yl 4,6-O-[(1R)-ethylidene]-beta-D-glucopyranoside(Non-covalent)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Chan, P.F. et al., Structural basis of DNA gyrase inhibition by antibacterial QPT-1, anticancer drug etoposide and moxifloxacin. Nat Commun (2015)
Release Date
2015-12-16
Peptides
DNA gyrase subunit A: AC
DNA gyrase subunit B: BD
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
C
C
B
B
D
D

DNA gyrase subunit A

DNA gyrase subunit B

Related Entries With Identical Sequence

5cdr.1