SMTL ID : 5ce3.1 (1 other biounit)

The Yersinia YopO - actin complex with MgADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.93 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 21 residues within 4Å: Chain A: G.14, S.15, G.16, M.17, K.19, G.75, G.157, D.158, G.159, V.160, G.183, R.211, K.214, E.215, G.302, G.303, T.304, M.306, Y.307, K.337 Ligands: CA.2 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:S.15, A:S.15, A:G.16, A:M.17, A:M.17, A:G.157, A:G.157, A:D.158, A:D.158, A:G.159, A:V.160, A:V.160, A:K.214, A:E.215, A:G.303, A:K.337 Water bridges: A:K.19, A:K.19, A:K.19 Salt bridges: A:K.19, A:K.19 pi-Stacking: A:Y.307

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain A: Q.138 Ligands: ATP.1 No protein-ligand interaction detected (PLIP)

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.3: 16 residues within 4Å: Chain B: E.57, S.58, I.60, V.72, K.74, R.77, M.125, D.126, E.127, V.128, R.132, G.185, N.186, I.199, D.200 Ligands: MG.4 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:S.58, B:D.126, B:V.128, B:R.132, B:R.132 Water bridges: B:G.185, B:D.200, B:D.200 Salt bridges: B:K.74, B:K.74, B:R.77

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 3 residues within 4Å: Chain B: N.186, D.200 Ligands: ADP.3 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.200, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, W.L. et al., The Yersinia YopO - actin complex with MgADP. To Be Published

Release Date

2016-07-06

Peptides

Actin: A
Protein kinase YopO: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Actin

Protein kinase YopO

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