SMTL ID : 5cg0.1 (2 other biounits)

Crystal structure of Spodoptera frugiperda Beta-glycosidase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: N.186, T.188, P.326, V.327 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.327 NAG-NAG.2: 4 residues within 4Å: Chain B: N.186, P.324, Y.325, P.326 No protein-ligand interaction detected (PLIP)

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 9 residues within 4Å: Chain A: Q.19, E.167, Y.311, W.351, E.379, W.424, E.431, W.432, F.440 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.19, A:Y.311, A:Y.311, A:W.432 Water bridges: A:E.170, A:E.434 TRS.4: 9 residues within 4Å: Chain B: Q.19, E.167, Y.311, W.351, E.379, W.424, E.431, W.432, F.440 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.19, B:E.167, B:Y.311, B:W.432 Water bridges: B:E.431

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tamaki, F.K. et al., Using the Amino Acid Network to Modulate the Hydrolytic Activity of beta-Glycosidases. PLoS ONE (2016)

Release Date

2015-12-09

Peptides

Beta-glucosidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Beta-glucosidase

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