- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.3: 6 residues within 4Å:- Chain A: G.98, H.99, T.100, H.105, R.696, E.698
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:H.99, A:T.100, A:T.100, A:E.698
- Salt bridges: A:H.99, A:H.105, A:R.696
PO4.4: 5 residues within 4Å:- Chain A: F.446, T.447, R.448, R.451
- Ligands: PEG.24
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:T.447, A:T.447, A:R.448
- Water bridges: A:R.451, A:R.451
- Salt bridges: A:R.448, A:R.451
PO4.33: 6 residues within 4Å:- Chain B: G.98, H.99, T.100, H.105, R.696, E.698
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:H.99, B:T.100, B:T.100
- Salt bridges: B:H.105, B:R.696
PO4.34: 4 residues within 4Å:- Chain B: F.446, T.447, R.448, R.451
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:T.447, B:R.448
- Water bridges: B:R.451, B:R.451
- Salt bridges: B:R.448, B:R.451
- 19 x NA: SODIUM ION(Non-functional Binders)
NA.5: 4 residues within 4Å:- Chain A: L.152, A.155, R.156, R.181
Ligand excluded by PLIPNA.6: 5 residues within 4Å:- Chain A: S.2, V.3, V.12, G.214, E.215
Ligand excluded by PLIPNA.7: 5 residues within 4Å:- Chain A: P.499, E.548, Y.549, S.552, K.554
Ligand excluded by PLIPNA.8: 5 residues within 4Å:- Chain A: G.509, G.510, P.511, G.512, P.627
Ligand excluded by PLIPNA.9: 4 residues within 4Å:- Chain A: Q.540, Y.549, L.550
- Ligands: NA.15
Ligand excluded by PLIPNA.10: 2 residues within 4Å:- Chain A: E.29, R.227
Ligand excluded by PLIPNA.11: 5 residues within 4Å:- Chain A: D.10, D.11, A.35, T.36, E.698
Ligand excluded by PLIPNA.12: 4 residues within 4Å:- Chain A: W.302, P.499, D.500
- Ligands: GLC-GLC.1
Ligand excluded by PLIPNA.13: 4 residues within 4Å:- Chain A: S.238, P.559, R.560, F.562
Ligand excluded by PLIPNA.14: 1 residues within 4Å:- Ligands: 1PE.17
Ligand excluded by PLIPNA.15: 5 residues within 4Å:- Chain A: E.538, Y.549, R.558, R.560
- Ligands: NA.9
Ligand excluded by PLIPNA.35: 6 residues within 4Å:- Chain B: G.1, S.2, I.9, V.12, G.214, E.215
Ligand excluded by PLIPNA.36: 3 residues within 4Å:- Chain B: Y.394, P.421, N.423
Ligand excluded by PLIPNA.37: 5 residues within 4Å:- Chain A: R.451
- Chain B: R.39, E.40, G.41, D.43
Ligand excluded by PLIPNA.38: 5 residues within 4Å:- Chain B: D.10, D.11, A.35, T.36, E.698
Ligand excluded by PLIPNA.39: 6 residues within 4Å:- Chain A: R.448
- Chain B: V.37, W.38, V.45, D.102
- Ligands: EDO.27
Ligand excluded by PLIPNA.40: 8 residues within 4Å:- Chain B: A.522, T.523, M.524, G.525, P.526, R.583, L.589, K.610
Ligand excluded by PLIPNA.41: 5 residues within 4Å:- Chain B: V.30, E.591, R.593, P.613, L.695
Ligand excluded by PLIPNA.42: 5 residues within 4Å:- Chain B: V.26, P.224, R.227, F.228, R.590
Ligand excluded by PLIP- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- 2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.18: 7 residues within 4Å:- Chain A: Y.661, W.663, N.667, Y.668, V.669, R.670, H.679
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Y.668, A:R.670
PGE.44: 3 residues within 4Å:- Chain B: W.242, D.243, D.561
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:W.242, B:D.561
- Water bridges: B:W.242, B:S.564
- 3 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
PG4.19: 8 residues within 4Å:- Chain A: D.325, R.402, I.405, S.406, H.407, G.408, E.435, N.436
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.325, A:R.402, A:N.436
PG4.20: 4 residues within 4Å:- Chain A: Q.540, L.550, N.551, R.558
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.540, A:N.551
- Water bridges: A:R.287
PG4.21: 10 residues within 4Å:- Chain A: V.249, H.250, R.284, G.296, D.297, V.298, E.308, H.315, Q.317, L.557
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:H.250, A:R.284, A:R.284, A:E.308, A:Q.317
- 4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.22: 3 residues within 4Å:- Chain A: R.156, R.160, T.163
No protein-ligand interaction detected (PLIP)PEG.23: 8 residues within 4Å:- Chain A: P.97, G.98, T.100, P.101, D.102, V.103, F.104
- Chain B: R.448
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:R.448, A:G.98, A:D.102
PEG.24: 5 residues within 4Å:- Chain A: F.446, T.447, Y.466, W.469
- Ligands: PO4.4
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.447
- Water bridges: A:E.547
PEG.46: 5 residues within 4Å:- Chain B: L.536, E.538, N.539, Q.540
- Ligands: 1PE.45
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:L.536, B:N.539, B:Q.540
- Water bridges: B:Q.540
- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.25: 2 residues within 4Å:- Chain A: Y.466, R.470
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.470, A:R.470
EDO.26: 2 residues within 4Å:- Chain A: F.537, L.572
No protein-ligand interaction detected (PLIP)EDO.27: 4 residues within 4Å:- Chain A: R.448
- Chain B: P.101, D.102
- Ligands: NA.39
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:R.448, B:D.102
EDO.28: 5 residues within 4Å:- Chain A: Q.13, V.15, V.16, D.488, I.489
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.697
- Water bridges: A:S.17
EDO.29: 4 residues within 4Å:- Chain A: H.356, E.358, W.359, D.389
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.389
- Water bridges: A:H.356
EDO.30: 6 residues within 4Å:- Chain A: L.384, F.386, T.419, K.420, P.421
- Chain B: E.40
6 PLIP interactions:4 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:L.384, B:E.40
- Water bridges: A:L.384, A:T.419, A:T.419, B:R.6
EDO.31: 3 residues within 4Å:- Chain A: Q.91, T.109, W.116
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.91, A:T.109
EDO.32: 6 residues within 4Å:- Chain A: S.96, H.105, G.106, H.107, L.692, R.696
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.96, A:L.692
EDO.47: 4 residues within 4Å:- Chain B: K.473, H.598, H.599, V.600
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:K.473, B:H.598, B:V.600
EDO.48: 7 residues within 4Å:- Chain B: K.24, A.25, E.29, A.487, D.488, R.491, R.593
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.593
- Water bridges: B:K.24, B:D.488, B:R.491
EDO.49: 6 residues within 4Å:- Chain B: A.47, T.48, L.93, P.94, M.95, W.123
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:M.95
- Water bridges: B:A.47, B:A.47
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mendes, V. et al., Structure of Mycobacterium thermoresistibile GlgE defines novel conformational states that contribute to the catalytic mechanism. Sci Rep (2015)
- Release Date
- 2015-12-09
- Peptides
- Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- 19 x NA: SODIUM ION(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- 2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 3 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mendes, V. et al., Structure of Mycobacterium thermoresistibile GlgE defines novel conformational states that contribute to the catalytic mechanism. Sci Rep (2015)
- Release Date
- 2015-12-09
- Peptides
- Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B