- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.38 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 4 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 1 x MO: MOLYBDENUM ATOM(Non-covalent)
- 1 x MGD: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE(Non-covalent)
MGD.3: 40 residues within 4Å:- Chain A: N.35, K.76, D.170, W.200, G.201, S.202, N.203, Q.206, T.207, R.208, I.228, S.229, P.230, D.231, N.233, P.247, G.248, D.250, G.421, G.422, G.423, T.424, W.427, Y.457, I.458, G.459, N.761, P.763, H.764, S.765, R.766, S.768, V.769, H.770, R.830, H.835, R.882
- Ligands: MO.2, MD1.4, BSY.13
26 PLIP interactions:26 interactions with chain A- Hydrogen bonds: A:K.76, A:N.203, A:T.207, A:R.208, A:I.228, A:S.229, A:N.233, A:G.248, A:G.422, A:G.423, A:N.761, A:H.764, A:H.764, A:R.766, A:S.768, A:H.770, A:R.830, A:R.830
- Water bridges: A:T.207, A:D.231, A:D.231, A:D.250, A:G.423, A:S.765
- Salt bridges: A:D.250, A:R.882
- 1 x MD1: PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER(Non-covalent)
MD1.4: 35 residues within 4Å:- Chain A: L.33, N.35, P.138, Y.168, D.170, H.426, Y.536, R.537, G.538, N.539, Q.543, K.545, I.564, N.565, I.566, R.567, D.569, S.581, W.584, K.587, D.615, S.762, H.764, V.769, H.770, S.771, T.772, H.835, C.836, Q.849, Q.881, R.882
- Ligands: MO.2, MGD.3, BSY.13
32 PLIP interactions:32 interactions with chain A- Hydrogen bonds: A:Y.168, A:H.426, A:R.537, A:N.539, A:Q.543, A:K.545, A:I.564, A:N.565, A:R.567, A:D.569, A:D.569, A:S.581, A:K.587, A:K.587, A:S.762, A:S.762, A:S.762, A:H.764, A:V.769, A:H.770, A:S.771, A:T.772, A:Q.849, A:R.882
- Water bridges: A:N.35, A:Y.136, A:Y.136, A:R.537, A:D.615, A:Q.881
- Salt bridges: A:D.615, A:H.770
- 15 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 7 residues within 4Å:- Chain A: W.242, I.243, H.244, V.398, T.399, A.402
- Chain B: E.268
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:H.244, A:H.244, A:T.399, A:T.399
EDO.6: 7 residues within 4Å:- Chain A: K.462, T.593, S.594, H.596, S.597, N.697, Y.708
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.462, A:N.697
- Water bridges: A:K.462, A:T.593
EDO.7: 7 residues within 4Å:- Chain A: F.192, N.193, S.194, K.195, A.218, N.221, A.223
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.221
EDO.8: 7 residues within 4Å:- Chain A: N.804, P.896, I.897, S.898
- Chain B: T.109, P.110, R.111
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.804
- Water bridges: A:F.899
EDO.9: 5 residues within 4Å:- Chain A: K.58, I.60, A.61, P.62, K.690
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.690, A:K.690
EDO.10: 11 residues within 4Å:- Chain A: R.96, G.98, E.99, R.100, G.101, E.102, G.103, K.104, W.105, L.573, S.575
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:G.98, A:G.101, A:E.102, A:G.103, A:K.104, A:S.575
EDO.11: 2 residues within 4Å:- Chain A: E.495, N.553
2 PLIP interactions:2 interactions with chain A- Water bridges: A:K.557, A:K.557
EDO.12: 7 residues within 4Å:- Chain A: S.792, P.793, L.794, N.824, E.826
- Chain B: E.124, Y.125
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:Y.125, A:S.792
- Water bridges: A:R.828
EDO.18: 8 residues within 4Å:- Chain A: F.9, Y.11, S.12, E.15
- Chain B: Y.155, R.157, E.158, Q.159
4 PLIP interactions:1 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:Y.11, B:E.158, B:Q.159
- Water bridges: B:Q.159
EDO.19: 5 residues within 4Å:- Chain A: W.806, A.894
- Chain B: R.103, R.105
- Ligands: EDO.28
5 PLIP interactions:1 interactions with chain A, 4 interactions with chain B- Hydrogen bonds: A:W.806, B:R.103, B:R.105
- Water bridges: B:R.103, B:R.105
EDO.24: 9 residues within 4Å:- Chain B: I.82, G.85, I.86, F.88, P.108, T.109, P.110, R.111, S.112
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:I.82, B:I.86, B:R.111, B:S.112
EDO.26: 8 residues within 4Å:- Chain B: V.223, S.231, S.232, V.233, T.325, D.326, M.327, M.328
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.232, B:S.232, B:V.233
EDO.27: 9 residues within 4Å:- Chain A: P.71
- Chain B: V.213, A.214, C.216, R.219, A.220, M.221, M.327, M.328
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:M.221, B:M.221
EDO.28: 9 residues within 4Å:- Chain A: W.806, R.819, D.842
- Chain B: R.103, R.105, P.106, T.109, P.110
- Ligands: EDO.19
4 PLIP interactions:1 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:W.806, B:R.103, B:R.105, B:R.105
EDO.29: 8 residues within 4Å:- Chain B: T.28, C.31, K.32, T.36, M.44, Y.45, W.46, R.47
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:K.32, B:T.36, B:W.46, B:R.47, B:R.47
- 1 x BSY: BISELENITE ION(Non-covalent)
- 1 x SO3: SULFITE ION(Non-covalent)
- 3 x NA: SODIUM ION(Non-functional Binders)
NA.15: 2 residues within 4Å:- Chain A: H.88, V.777
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:V.777
- Water bridges: A:D.82, A:D.82, A:D.82, A:D.82, A:N.776, A:N.776
NA.16: 2 residues within 4Å:- Chain A: H.128, E.559
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.559
- Water bridges: A:N.127
NA.25: 3 residues within 4Å:- Chain B: D.91, R.95, G.102
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.91, B:G.102
- 1 x ZN: ZINC ION(Non-covalent)
- 1 x F3S: FE3-S4 CLUSTER(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Youngblut, M.D. et al., Perchlorate Reductase Is Distinguished by Active Site Aromatic Gate Residues. J.Biol.Chem. (2016)
- Release Date
- 2016-03-09
- Peptides
- DMSO reductase family type II enzyme, molybdopterin subunit: A
DMSO reductase family type II enzyme, iron-sulfur subunit: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.38 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 4 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 1 x MO: MOLYBDENUM ATOM(Non-covalent)
- 1 x MGD: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE(Non-covalent)
- 1 x MD1: PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER(Non-covalent)
- 15 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x BSY: BISELENITE ION(Non-covalent)
- 1 x SO3: SULFITE ION(Non-covalent)
- 3 x NA: SODIUM ION(Non-functional Binders)
- 1 x ZN: ZINC ION(Non-covalent)
- 1 x F3S: FE3-S4 CLUSTER(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Youngblut, M.D. et al., Perchlorate Reductase Is Distinguished by Active Site Aromatic Gate Residues. J.Biol.Chem. (2016)
- Release Date
- 2016-03-09
- Peptides
- DMSO reductase family type II enzyme, molybdopterin subunit: A
DMSO reductase family type II enzyme, iron-sulfur subunit: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B