SMTL ID : 5ci7.1

Structure of ULK1 bound to a selective inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

monomer

Ligands

1 x 51W: N-[3-({4-[(3-aminopropyl)amino]-5-iodopyrimidin-2-yl}amino)phenyl]pyrrolidine-1-carboxamide(Non-covalent)

51W.1: 16 residues within 4Å: Chain A: L.25, I.26, G.27, H.28, V.34, A.48, V.80, M.96, E.97, Y.98, C.99, N.100, G.102, D.103, L.149 Ligands: GOL.4 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.98 Hydrogen bonds: A:C.99, A:C.99, A:D.103, A:D.103

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: E.77, E.97, S.151, N.152, P.153, R.164, K.166 Ligands: GOL.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.77, A:E.77, A:S.151, A:K.166 GOL.3: 8 residues within 4Å: Chain A: L.45, E.46, Y.83, E.97, Y.98, S.151, K.166 Ligands: GOL.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.97 Water bridges: A:E.46, A:Y.83, A:Y.98 GOL.4: 8 residues within 4Å: Chain A: G.27, H.28, G.29, A.32, V.34, K.50, D.169 Ligands: 51W.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.50 Water bridges: A:D.169, A:D.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lazarus, M.B. et al., Discovery and structure of a new inhibitor scaffold of the autophagy initiating kinase ULK1. Bioorg.Med.Chem. (2015)

Release Date

2015-08-26

Peptides

Serine/threonine-protein kinase ULK1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase ULK1

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