- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.40 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x B12: COBALAMIN(Non-covalent)
- 1 x 5AD: 5'-DEOXYADENOSINE(Non-covalent)
- 2 x CO6: ISOBUTYRYL-COENZYME A(Non-covalent)
CO6.3: 27 residues within 4Å:- Chain A: F.605, F.607, K.608, R.609, R.616, F.618, R.642, S.644, S.697, T.699, R.748, T.750, Q.752, Q.762, Y.792, Y.799, H.800, S.841, F.843, R.876, K.881, H.883, Q.885, N.916, S.917
- Ligands: B12.1, 5AD.2
26 PLIP interactions:26 interactions with chain A- Hydrophobic interactions: A:F.618, A:T.699, A:Y.792, A:Y.799, A:K.881, A:H.883, A:N.916
- Hydrogen bonds: A:F.607, A:R.609, A:S.644, A:S.697, A:T.750, A:Q.752, A:Y.792, A:S.841
- Salt bridges: A:R.609, A:R.609, A:R.616, A:R.642, A:R.748, A:R.748, A:R.876, A:K.881, A:K.881
- pi-Stacking: A:F.605, A:F.605
CO6.8: 4 residues within 4Å:- Chain B: F.605, F.607, R.609, R.876
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:F.607
- Salt bridges: B:R.876
- pi-Stacking: B:F.605, B:F.605
- 2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
GDP.4: 18 residues within 4Å:- Chain A: T.237, G.239, A.240, G.241, K.242, S.243, S.244, R.285, E.330, N.377, K.378, D.380, Q.415, A.416, S.417, E.993, N.1112
- Ligands: MG.5
19 PLIP interactions:19 interactions with chain A- Hydrogen bonds: A:G.239, A:A.240, A:G.241, A:K.242, A:S.243, A:S.244, A:S.244, A:N.377, A:K.378, A:K.378, A:A.416, A:S.417, A:S.417, A:E.993, A:N.1112
- Salt bridges: A:K.242, A:R.285, A:D.380, A:E.993
GDP.9: 19 residues within 4Å:- Chain B: T.237, G.239, A.240, G.241, K.242, S.243, S.244, R.285, E.330, N.377, K.378, D.380, R.381, Q.415, A.416, S.417, E.993, N.1112
- Ligands: MG.10
19 PLIP interactions:19 interactions with chain B- Hydrogen bonds: B:G.239, B:A.240, B:G.241, B:K.242, B:S.243, B:S.244, B:S.244, B:N.377, B:K.378, B:K.378, B:A.416, B:S.417, B:S.417, B:N.1112, B:N.1112
- Salt bridges: B:K.242, B:R.285, B:D.380, B:E.993
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.5: 5 residues within 4Å:- Chain A: S.243, D.282, E.330
- Ligands: GDP.4, MG.6
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:S.243, A:D.282, A:E.330
MG.6: 6 residues within 4Å:- Chain A: I.268, D.269, D.282, E.330, T.331
- Ligands: MG.5
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:D.269, A:D.282, A:E.330
MG.10: 5 residues within 4Å:- Chain B: S.243, D.282, E.330
- Ligands: GDP.9, MG.11
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:S.243, B:D.282, B:E.330
MG.11: 6 residues within 4Å:- Chain B: I.268, D.269, D.282, E.330, T.331
- Ligands: MG.10
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:I.268, B:D.269, B:D.282, B:E.330, B:T.331
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jost, M. et al., Structural Basis for Substrate Specificity in Adenosylcobalamin-dependent Isobutyryl-CoA Mutase and Related Acyl-CoA Mutases. J.Biol.Chem. (2015)
- Release Date
- 2015-09-09
- Peptides
- Isobutyryl-CoA mutase fused: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.40 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x B12: COBALAMIN(Non-covalent)
- 1 x 5AD: 5'-DEOXYADENOSINE(Non-covalent)
- 2 x CO6: ISOBUTYRYL-COENZYME A(Non-covalent)
- 2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jost, M. et al., Structural Basis for Substrate Specificity in Adenosylcobalamin-dependent Isobutyryl-CoA Mutase and Related Acyl-CoA Mutases. J.Biol.Chem. (2015)
- Release Date
- 2015-09-09
- Peptides
- Isobutyryl-CoA mutase fused: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B