SMTL ID : 5coo.1

X-ray crystal structure of wild type HIV-1 protease in complex with GRL-085

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

1 x 52Z: (3R,3aS,4S,7aS)-3-hydroxyhexahydro-4H-furo[2,3-b]pyran-4-yl [(2S,3R)-3-hydroxy-1-(4-methoxyphenyl)-4-{[(4-methoxyphenyl)sulfonyl](2-methylpropyl)amino}butan-2-yl]carbamate(Non-covalent)

52Z.1: 23 residues within 4Å: Chain A: N.25, G.27, A.28, D.29, D.30, V.32, G.48, G.49, I.50, V.82 Chain B: R.8, N.25, G.27, A.28, D.30, V.32, I.47, G.48, G.49, I.50, P.81, V.82, I.84 17 PLIP interactions: 10 interactions with chain A, 7 interactions with chain B Hydrophobic interactions: A:V.32, A:V.82, B:A.28, B:V.32, B:I.50, B:P.81, B:V.82 Hydrogen bonds: A:N.25, A:G.27, A:D.29, A:D.30, A:G.48, B:N.25, B:D.30 Water bridges: A:I.50, A:I.50, A:R.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aoki, M. et al., C-5-Modified Tetrahydropyrano-Tetrahydofuran-Derived Protease Inhibitors (PIs) Exert Potent Inhibition of the Replication of HIV-1 Variants Highly Resistant to Various PIs, including Darunavir. J.Virol. (2015)

Release Date

2016-01-13

Peptides

HIV-1 protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HIV-1 protease

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