SMTL ID : 5coy.1

Crystal structure of CC chemokine 5 (CCL5)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.44 Å

Oligo State

homo-dimer

Ligands

1 x GLC- Z9N: alpha-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-Z9N.1: 4 residues within 4Å: Chain A: S.1, T.5, S.28, K.30 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.30, A:K.30, A:S.1, A:T.5, A:T.5, A:S.28 Water bridges: A:G.29, A:S.1, A:S.1

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 5 residues within 4Å: Chain A: H.20, T.40, R.41, K.42, R.44 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.40, A:R.41, A:K.42 Salt bridges: A:H.20, A:R.44 PO4.3: 5 residues within 4Å: Chain B: H.20, T.40, R.41, K.42, R.44 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:H.20, B:R.41, B:K.42 Water bridges: B:K.42, B:K.42, B:K.42 Salt bridges: B:H.20, B:K.42, B:R.44

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 6 residues within 4Å: Chain A: A.10, Y.11, I.12, V.46, C.47 Chain B: D.3 No protein-ligand interaction detected (PLIP) PEG.5: 5 residues within 4Å: Chain B: K.22, E.23, V.39, N.43, Q.45 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.23, B:N.43, B:Q.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liang, W.G. et al., Structural basis for oligomerization and glycosaminoglycan binding of CCL5 and CCL3. Proc.Natl.Acad.Sci.USA (2016)

Release Date

2016-04-13

Peptides

C-C motif chemokine 5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C-C motif chemokine 5

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