SMTL ID : 5cp1.1

Crystal structure of C239S mutant of a novel disulfide oxidoreductase from Deinococcus radiodurans

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 4 residues within 4Å: Chain A: D.145, L.146, D.147 Ligands: GOL.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.146, A:D.147, A:D.147 Salt bridges: A:R.164 ACT.2: 2 residues within 4Å: Chain A: T.148, K.151 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.148 Water bridges: A:K.151, A:K.151 Salt bridges: A:K.151 ACT.8: 4 residues within 4Å: Chain B: D.145, L.146, D.147 Ligands: GOL.11 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:L.146, B:D.147, B:D.147 Salt bridges: B:R.164 ACT.9: 2 residues within 4Å: Chain B: T.148, K.151 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.148 Water bridges: B:K.151, B:K.151 Salt bridges: B:K.151

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: A.21, L.54, D.55, A.58, L.106, A.107, Y.136 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.55, A:L.106, A:A.107 GOL.4: 6 residues within 4Å: Chain A: P.60, L.111, N.144, D.145, L.146 Ligands: ACT.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.144, A:D.145, A:L.146 GOL.5: 4 residues within 4Å: Chain A: W.24, S.84, H.87, M.88 1 PLIP interactions: 1 interactions with chain A Water bridges: A:H.87 GOL.6: 4 residues within 4Å: Chain A: H.87, Q.90, T.91, Q.94 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.87, A:Q.90 GOL.10: 7 residues within 4Å: Chain B: A.21, L.54, D.55, A.58, L.106, A.107, Y.136 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.55, B:L.106, B:A.107, B:Y.136 GOL.11: 6 residues within 4Å: Chain B: P.60, L.111, N.144, D.145, L.146 Ligands: ACT.8 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.144, B:D.145, B:D.145, B:L.146 GOL.12: 4 residues within 4Å: Chain B: W.24, S.84, H.87, M.88 1 PLIP interactions: 1 interactions with chain B Water bridges: B:H.87 GOL.13: 4 residues within 4Å: Chain B: H.87, Q.90, T.91, Q.94 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.87

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 5 residues within 4Å: Chain A: I.16, S.18, C.25, K.29, W.49 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.18, A:S.18 EDO.14: 5 residues within 4Å: Chain B: I.16, S.18, C.25, K.29, W.49 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.18, B:S.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bihani, S.C. et al., Crystal structure of a novel disulfide oxidoreductase from Deinococcus radiodurans. To Be Published

Release Date

2016-07-20

Peptides

FrnE protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

FrnE protein