SMTL ID : 5cpq.1

Disproportionating enzyme 1 from Arabidopsis - apo form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.13 Å

Oligo State

homo-dimer

Ligands

14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: T.176, F.249, L.252, F.253, K.256 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.176, A:K.256 EDO.2: 6 residues within 4Å: Chain A: A.129, N.130, D.281, M.282, R.347, A.351 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.281, A:R.347, A:R.347 EDO.3: 4 residues within 4Å: Chain A: P.283, I.284, Y.285, D.361 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.285, A:Y.285 Water bridges: A:S.328 EDO.4: 8 residues within 4Å: Chain A: A.351, Q.352, Y.355, D.356, E.357, C.358, I.403, K.404 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.404 EDO.5: 11 residues within 4Å: Chain A: T.459, H.460, N.462, D.463, T.464, P.511, Q.513, D.514, R.523, M.524 Ligands: EDO.6 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.513, A:D.514, A:M.524 Water bridges: A:I.465 EDO.6: 8 residues within 4Å: Chain A: L.75, L.76, H.460, M.512, Q.513, M.524, W.536 Ligands: EDO.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.75, A:M.512, A:Q.513 Water bridges: A:H.77 EDO.7: 5 residues within 4Å: Chain B: T.176, F.249, L.252, F.253, K.256 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.176, B:K.256 EDO.8: 4 residues within 4Å: Chain B: P.283, I.284, Y.285, D.361 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.285, B:D.361, B:D.361 EDO.9: 5 residues within 4Å: Chain B: A.129, N.130, D.281, M.282, R.347 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.281, B:R.347, B:R.347 Water bridges: B:Y.355 EDO.10: 8 residues within 4Å: Chain B: A.351, Q.352, Y.355, D.356, E.357, C.358, I.403, K.404 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.357, B:K.404 EDO.11: 5 residues within 4Å: Chain B: E.207, D.208, Y.211, R.234, L.239 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.208, B:R.234, B:R.234 EDO.12: 8 residues within 4Å: Chain B: L.75, L.76, H.460, M.512, Q.513, M.524, W.536 Ligands: EDO.13 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:L.75, B:M.512, B:Q.513 Water bridges: B:H.77 EDO.13: 10 residues within 4Å: Chain B: T.459, H.460, N.462, T.464, P.511, Q.513, D.514, R.523, M.524 Ligands: EDO.12 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.514, B:M.524 Water bridges: B:I.465 EDO.14: 5 residues within 4Å: Chain B: R.523, N.525, T.526, G.532, N.533 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:T.526, B:T.526, B:T.526 Water bridges: B:S.521, B:R.523, B:R.523, B:G.532

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

O'Neill, E.C. et al., Structural Dissection of the Maltodextrin Disproportionation Cycle of the Arabidopsis Plastidial Disproportionating Enzyme 1 (DPE1). J.Biol.Chem. (2015)

Release Date

2015-11-04

Peptides

4-alpha-glucanotransferase DPE1, chloroplastic/amyloplastic: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

4-alpha-glucanotransferase DPE1, chloroplastic/amyloplastic

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