SMTL ID : 5cve.2 (1 other biounit)

Crystal Structure of human NRMT1 in complex with dimethylated fly H2B peptide and SAH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x PBE- PRO- LYS- THR- SER- GLY: N-terminal peptide from Histone H2B(Non-covalent)

PBE-PRO-LYS-THR-SER-GLY.1: 15 residues within 4Å: Chain A: W.40, M.50, L.51, G.52, Y.54, I.57, W.156, N.188, D.197, D.200, S.202, E.233, I.234, Y.235 Ligands: SAH.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.188

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.2: 21 residues within 4Å: Chain A: W.40, M.50, G.89, A.90, G.91, R.94, I.95, D.111, I.112, T.113, F.116, C.137, G.138, L.139, Q.140, Q.155, W.156, V.157, H.160, L.161 Ligands: PBE-PRO-LYS-THR-SER-GLY.1 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.89, A:I.112, A:T.113, A:T.113, A:T.113, A:L.139, A:Q.140, A:Q.140 Water bridges: A:Q.155 Salt bridges: A:R.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, R. et al., Molecular basis for histone N-terminal methylation by NRMT1. Genes Dev. (2015)

Release Date

2015-11-25

Peptides

N-terminal Xaa-Pro-Lys N-methyltransferase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

N-terminal Xaa-Pro-Lys N-methyltransferase 1

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