SMTL ID : 5cvi.1 (1 other biounit)

Structure of the manganese regulator SloR

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: D.7, K.10, E.99, E.102, H.103 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.7, A:E.99, A:E.102, A:H.103 ZN.2: 4 residues within 4Å: Chain A: R.77, E.80, C.123, H.125 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.80, A:C.123, A:H.125, H2O.1 ZN.3: 4 residues within 4Å: Chain A: H.76, E.80, H.95, D.160 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.76, A:H.95, A:D.160, H2O.1 ZN.4: 3 residues within 4Å: Chain A: R.74, E.111, H.132 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.111, A:H.132, H2O.1 ZN.5: 2 residues within 4Å: Chain A: H.172, E.198 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.172, A:E.198, A:E.198 ZN.6: 4 residues within 4Å: Chain B: D.7, E.99, E.102, H.103 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.7, B:E.99, B:E.102, B:H.103 ZN.7: 4 residues within 4Å: Chain B: R.77, E.80, C.123, H.125 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.80, B:C.123, B:H.125, H2O.2 ZN.8: 4 residues within 4Å: Chain B: H.76, E.80, H.95, D.160 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.76, B:H.95, B:D.160, B:D.160, H2O.1

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.9: 6 residues within 4Å: Chain A: H.86, L.87, N.88 Chain B: R.112, K.115, F.116 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.88, B:K.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Spatafora, G. et al., SloR structure and DNA binding studies inform the SloR-SRE interaction in Streptococcus mutans. to be published

Release Date

2015-08-12

Peptides

SloR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

SloR

Related Entries With Identical Sequence