SMTL ID : 5cvj.1 (1 other biounit)

Monolignol 4-O-methyltransferase 5 - coniferyl alcohol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 19 residues within 4Å: Chain A: W.166, F.179, M.183, S.187, G.211, G.213, D.234, L.235, V.238, G.253, D.254, M.255, F.256, K.268, W.269, I.270, D.273, W.274 Ligands: N7I.2 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:S.187, A:G.213, A:L.235, A:D.254, A:D.254, A:M.255, A:K.268, A:K.268 Water bridges: A:K.268, A:K.268, A:K.268, A:D.273 Salt bridges: A:K.268 pi-Stacking: A:W.166 SAH.6: 19 residues within 4Å: Chain B: W.166, F.179, M.183, S.187, G.211, G.213, D.234, L.235, V.238, G.253, D.254, M.255, F.256, K.268, W.269, I.270, D.273, W.274 Ligands: N7I.7 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:S.187, B:G.213, B:L.235, B:D.254, B:M.255, B:K.268 Water bridges: B:M.183, B:S.187, B:S.187, B:K.268 Salt bridges: B:K.268 pi-Stacking: B:W.166

2 x N7I: 4-[(1E)-3-hydroxyprop-1-en-1-yl]-2-methoxyphenol(Non-covalent)

N7I.2: 15 residues within 4Å: Chain A: F.130, L.133, A.134, I.165, W.166, F.179, M.183, W.269, H.272, D.273, L.322, M.323, Y.326, N.327 Ligands: SAH.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.179, A:W.269, A:L.322, A:Y.326 Hydrogen bonds: A:F.130, A:W.269, A:N.327 N7I.7: 14 residues within 4Å: Chain B: F.130, A.134, I.165, W.166, F.179, M.183, W.269, H.272, D.273, L.322, M.323, Y.326, N.327 Ligands: SAH.6 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:F.179, B:W.269, B:W.269, B:L.322, B:Y.326 Hydrogen bonds: B:W.269, B:N.327 Water bridges: B:A.134

11 x NO3: NITRATE ION(Non-functional Binders)

NO3.3: 6 residues within 4Å: Chain A: M.197, Y.198, N.199, G.200, K.351, A.353 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.199, A:N.199 NO3.4: 5 residues within 4Å: Chain A: N.121, D.123, T.188, I.189, K.192 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.121, A:D.123 NO3.5: 7 residues within 4Å: Chain A: K.120, G.124, V.125, S.126, P.129, K.181, S.185 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.126, A:S.126, A:K.181, A:K.181, A:S.185 NO3.8: 7 residues within 4Å: Chain B: K.120, G.124, V.125, S.126, P.129, K.181, S.185 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.120, B:S.126, B:S.185, B:S.185 NO3.9: 3 residues within 4Å: Chain B: D.276, E.277, L.280 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.276 NO3.10: 5 residues within 4Å: Chain B: G.153, G.154, I.155, N.158, K.159 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.153, B:I.155, B:N.158, B:K.159 NO3.11: 4 residues within 4Å: Chain B: F.233, L.251, V.259, P.260 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.258 NO3.12: 6 residues within 4Å: Chain B: M.197, Y.198, N.199, G.200, K.351, A.353 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:M.197, B:N.199, B:N.199, B:K.351, B:K.351 NO3.13: 4 residues within 4Å: Chain B: P.291, D.292, H.293, G.294 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.293, B:H.293 Water bridges: B:D.292 NO3.14: 4 residues within 4Å: Chain B: P.226, S.227, I.228, G.247 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.227 NO3.15: 3 residues within 4Å: Chain A: L.151, E.152 Chain B: T.72 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:L.151 Water bridges: B:T.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cai, Y. et al., Structure of coniferyl alcohol bound monolignol 4-O-methyltransferase at 1.68 Angstroms resolution. To Be Published

Release Date

2015-09-16

Peptides

(Iso)eugenol O-methyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
B

(Iso)eugenol O-methyltransferase

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