SMTL ID : 5czk.1

Structure of E. coli beta-glucuronidase bound with a novel, potent inhibitor 1-((6,8-dimethyl-2-oxo-1,2-dihydroquinolin-3-yl)methyl)-1-(2-hydroxyethyl)-3-(4-hydroxyphenyl)thiourea

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.39 Å

Oligo State

homo-dimer

Ligands

2 x 57Z: 1-[(6,8-dimethyl-2-oxo-1,2-dihydroquinolin-3-yl)methyl]-1-(2-hydroxyethyl)-3-(4-hydroxyphenyl)thiourea(Non-covalent)

57Z.1: 11 residues within 4Å: Chain A: L.363, G.364, I.365, E.415, V.448, M.449, F.450, Y.471, W.473, Y.474, V.475 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.363, A:L.363, A:L.363, A:I.365, A:V.448, A:Y.471, A:Y.471, A:Y.471, A:W.473, A:Y.474, A:Y.474 Hydrogen bonds: A:L.363 Water bridges: A:D.165, A:D.165, A:N.468, A:Y.474 pi-Stacking: A:Y.474 57Z.2: 9 residues within 4Å: Chain B: L.363, G.364, I.365, E.415, M.449, F.450, Y.471, Y.474, V.475 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:L.363, B:L.363, B:I.365, B:I.365, B:Y.471, B:Y.471, B:Y.471, B:Y.474, B:Y.474 Hydrogen bonds: B:L.363, B:G.364 Water bridges: B:N.468, B:N.468 pi-Stacking: B:Y.474

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wallace, B.D. et al., Structure and Inhibition of Microbiome beta-Glucuronidases Essential to the Alleviation of Cancer Drug Toxicity. Chem.Biol. (2015)

Release Date

2015-10-14

Peptides

Beta-glucuronidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Beta-glucuronidase

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