SMTL ID : 5d0j.2 (1 other biounit)

Grb7 SH2 with inhibitor peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

1 x SER- PHE- GLU- GLY- TYR- ASP- ASN- SER: G7-TEdFP peptide(Non-covalent)

SER-PHE-GLU-GLY-TYR-ASP-ASN-SER.1: 12 residues within 4Å: Chain B: R.26, S.48, R.50, N.51, V.56, K.66, H.67, Y.68, L.69, L.71, M.83 Ligands: PO4.2 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:V.56, B:Y.68, B:L.69, B:L.69, B:L.69, B:L.71 Hydrogen bonds: B:R.26, B:R.26, B:S.48, B:R.50, B:N.51, B:H.67, B:H.67, B:L.69, B:M.83 Salt bridges: B:K.66

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 7 residues within 4Å: Chain B: R.26, R.46, S.48, Q.49, R.50, V.56 Ligands: SER-PHE-GLU-GLY-TYR-ASP-ASN-SER.1 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.49, B:R.50 Salt bridges: B:R.26, B:R.46, B:R.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gunzburg, M.J. et al., Unexpected involvement of staple leads to redesign of selective bicyclic peptide inhibitor of Grb7. Sci Rep (2016)

Release Date

2016-06-15

Peptides

Growth factor receptor-bound protein 7: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Growth factor receptor-bound protein 7

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