SMTL ID : 5d0r.1

Crystal structure of human soluble Adenylyl Cyclase with the inhibitor bithionol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.24 Å

Oligo State

monomer

Ligands

1 x B1T: 2,2'-sulfanediylbis(4,6-dichlorophenol)(Non-covalent)

B1T.1: 15 residues within 4Å: Chain A: F.45, K.95, A.97, A.100, L.101, L.102, L.166, V.167, V.172, V.175, R.176, F.336, M.337, F.338 Ligands: ACT.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:A.97, A:A.100, A:L.102, A:V.172, A:R.176 Hydrogen bonds: A:V.335, A:M.337 pi-Stacking: A:F.45 Halogen bonds: A:K.95

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 7 residues within 4Å: Chain A: F.296, F.336, F.338, V.411, N.412, A.415 Ligands: B1T.1 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.338

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: S.80, H.398, T.399 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.80, A:T.399, A:T.399, A:T.399 EDO.4: 7 residues within 4Å: Chain A: T.55, S.59, L.289, I.390, F.392, G.408, Q.409 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.390, A:Q.409 EDO.5: 7 residues within 4Å: Chain A: H.162, S.163, K.267, Y.268, V.269, M.270, I.332 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.267 EDO.6: 5 residues within 4Å: Chain A: F.39, D.40, R.106, V.107, E.108 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.40, A:D.40, A:R.106, A:V.107 EDO.7: 5 residues within 4Å: Chain A: W.194, R.199, I.202, E.203, I.204 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.199, A:I.204, A:I.204 EDO.8: 4 residues within 4Å: Chain A: Y.240, P.241, K.246, L.248 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.248

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.9: 6 residues within 4Å: Chain A: Y.77, H.78, A.81, L.129, F.130, Q.133 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.78 pi-Cation interactions: A:Y.77 DMS.10: 6 residues within 4Å: Chain A: I.24, G.27, H.28, F.29, S.264, Y.268 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:F.29 DMS.11: 7 residues within 4Å: Chain A: H.162, T.322, L.325, K.326, G.330, Q.331, I.332 No protein-ligand interaction detected (PLIP)

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.12: 6 residues within 4Å: Chain A: T.161, H.162, Q.266, K.267, V.269, E.271 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.266, A:V.269, A:V.269 GOL.13: 6 residues within 4Å: Chain A: D.22, L.23, D.92, L.104, R.106, Y.239 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.23, A:R.106 Water bridges: A:L.23, A:L.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kleinboelting, S. et al., Bithionol Potently Inhibits Human Soluble Adenylyl Cyclase through Binding to the Allosteric Activator Site. J.Biol.Chem. (2016)

Release Date

2016-03-16

Peptides

Adenylate cyclase type 10: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Adenylate cyclase type 10

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