SMTL ID : 5d24.1

First bromodomain of BRD4 bound to inhibitor XD26

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x L26: 4-acetyl-N-[3-(2-amino-2-oxoethoxy)phenyl]-3-ethyl-5-methyl-1H-pyrrole-2-carboxamide(Non-covalent)

L26.1: 14 residues within 4Å: Chain A: W.39, P.40, F.41, Q.42, Q.43, V.45, K.49, L.50, L.52, Y.55, Y.97, N.98, I.104 Ligands: EDO.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.41, A:V.45, A:L.50, A:L.50, A:L.52, A:Y.55, A:Y.97, A:I.104 Hydrogen bonds: A:W.39, A:P.40, A:N.98 pi-Stacking: A:W.39

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: W.39, P.40, D.103, I.104 Ligands: L26.1 1 PLIP interactions: 1 interactions with chain A Water bridges: A:I.104 EDO.3: 2 residues within 4Å: Chain A: M.1, V.48 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.1 Water bridges: A:N.2 EDO.4: 3 residues within 4Å: Chain A: K.30, T.31, K.34 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.118, A:K.118 EDO.5: 2 residues within 4Å: Chain A: R.16, Q.17 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.17, A:Q.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hugle, M. et al., 4-Acyl Pyrrole Derivatives Yield Novel Vectors for Designing Inhibitors of the Acetyl-Lysine Recognition Site of BRD4(1). J.Med.Chem. (2016)

Release Date

2016-01-20

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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