SMTL ID : 5d2k.1 (1 other biounit)

4-oxalocrotonate decarboxylase from Pseudomonas putida G7 - complexed with magnesium and 2-oxoadipate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: K.69, E.114, E.116, E.147 Ligands: OOG.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.114, A:E.116, A:E.147, H2O.2

1 x OOG: 2-OXOADIPIC ACID(Non-covalent)

OOG.2: 17 residues within 4Å: Chain A: K.69, M.70, G.71, L.72, K.77, M.81, E.114, E.116, E.147, I.149, F.156, F.158, A.168, S.169, G.240, G.241 Ligands: MG.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.72 Hydrogen bonds: A:K.69, A:L.72, A:E.116, A:S.169, A:G.241 Water bridges: A:T.73 Salt bridges: A:K.77, A:K.77

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: R.55, L.68, P.232 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.55, A:R.55 EDO.4: 4 residues within 4Å: Chain A: V.66, F.173, T.175, F.236 2 PLIP interactions: 2 interactions with chain A Water bridges: A:T.175, A:T.175 EDO.5: 5 residues within 4Å: Chain A: H.126, G.127, P.128, A.225, E.229 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.126 EDO.6: 5 residues within 4Å: Chain A: Y.48, Y.88, L.223, E.226, R.227 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.88, A:E.226 EDO.7: 1 residues within 4Å: Chain A: E.199 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.199 EDO.8: 3 residues within 4Å: Chain A: L.27, Y.94 Ligands: EDO.9 No protein-ligand interaction detected (PLIP) EDO.9: 4 residues within 4Å: Chain A: Y.94, K.107, R.172 Ligands: EDO.8 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guimaraes, S.L. et al., Crystal Structures of Apo and Liganded 4-Oxalocrotonate Decarboxylase Uncover a Structural Basis for the Metal-Assisted Decarboxylation of a Vinylogous beta-Keto Acid. Biochemistry (2016)

Release Date

2016-05-04

Peptides

4-oxalocrotonate decarboxylase NahK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

4-oxalocrotonate decarboxylase NahK

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