SMTL ID : 5d3k.1

Crystal structure of the thioesterase domain of deoxyerythronolide B synthase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

2 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.1: 6 residues within 4Å: Chain A: A.63, I.65, H.69, R.73, H.127, T.181 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.73, A:T.181 Water bridges: A:H.127, A:A.129, A:T.181, A:H.245, A:Q.250 1PE.2: 12 residues within 4Å: Chain A: Y.8, V.17, A.129, L.132, Q.162, M.165, L.169, L.172, T.173, D.196, T.199, G.200 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.8

3 x CA: CALCIUM ION(Non-covalent)

CA.3: 2 residues within 4Å: Chain A: D.35, D.38 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.35, H2O.1, H2O.7 CA.4: 3 residues within 4Å: Chain A: E.94, D.185, T.187 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.94, A:D.185, H2O.4 CA.5: 1 residues within 4Å: Chain A: D.261 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.261, H2O.2, H2O.3, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Argyropoulos, P. et al., Towards a characterization of the structural determinants of specificity in the macrocyclizing thioesterase for deoxyerythronolide B biosynthesis. Biochim.Biophys.Acta (2015)

Release Date

2015-12-09

Peptides

Erythronolide synthase, modules 5 and 6: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Erythronolide synthase, modules 5 and 6

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