SMTL ID : 5d3s.1

First bromodomain of BRD4 bound to inhibitor XD44

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x 579: 4-acetyl-3-ethyl-N-[4-fluoro-3-(morpholin-4-ylsulfonyl)phenyl]-5-methyl-1H-pyrrole-2-carboxamide(Non-covalent)

579.1: 12 residues within 4Å: Chain A: W.39, P.40, F.41, Q.43, V.45, L.50, L.52, Y.55, Y.97, N.98, I.104 Ligands: BU3.3 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.41, A:V.45, A:L.50, A:Y.55, A:Y.97, A:I.104 Hydrogen bonds: A:Q.43, A:N.98 pi-Stacking: A:W.39

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 1 residues within 4Å: Chain A: L.50 No protein-ligand interaction detected (PLIP)

1 x BU3: (R,R)-2,3-BUTANEDIOL(Non-covalent)

BU3.3: 6 residues within 4Å: Chain A: W.39, P.40, D.103, I.104, M.107 Ligands: 579.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.40, A:I.104 Water bridges: A:I.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hugle, M. et al., 4-Acyl Pyrrole Derivatives Yield Novel Vectors for Designing Inhibitors of the Acetyl-Lysine Recognition Site of BRD4(1). J.Med.Chem. (2016)

Release Date

2016-01-20

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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