SMTL ID : 5d3z.1

Crystal structure of the thioesterase domain of deoxyerythronolide B synthase in complex with a small phosphonate inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x 57H: prop-2-en-1-ylphosphonic acid(Covalent)

57H.1: 5 residues within 4Å: Chain A: S.128, A.129, M.165, H.245 Ligands: 1PE.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.129 Water bridges: A:T.62, A:T.62, A:A.63

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.2: 9 residues within 4Å: Chain A: A.63, I.65, H.69, E.70, H.127, L.176, T.181, Q.250 Ligands: 57H.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.127, A:T.181 Water bridges: A:A.129, A:T.181, A:Q.250

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 1 residues within 4Å: Chain A: D.35 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.35, H2O.1, H2O.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Argyropoulos, P. et al., Towards a characterization of the structural determinants of specificity in the macrocyclizing thioesterase for deoxyerythronolide B biosynthesis. Biochim.Biophys.Acta (2015)

Release Date

2015-12-09

Peptides

Erythronolide synthase, modules 5 and 6: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Erythronolide synthase, modules 5 and 6

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