- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- monomer
- Ligands
- 2 x NA: SODIUM ION(Non-functional Binders)
- 1 x CA: CALCIUM ION(Non-covalent)
- 7 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)
LDA.4: 4 residues within 4Å:- Chain A: F.88, A.127, A.128, Y.190
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:F.88
LDA.5: 4 residues within 4Å:- Chain A: W.318, A.326, G.327, L.382
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:W.318, A:W.318, A:W.318, A:L.382
LDA.6: 7 residues within 4Å:- Chain A: I.221, I.257, A.276, A.278, F.310, V.312, R.332
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:I.221, A:I.257, A:A.276, A:A.278, A:V.312
LDA.7: 7 residues within 4Å:- Chain A: H.180, G.209, D.210, I.211, V.223, I.225, L.255
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:I.211, A:I.211, A:V.223, A:I.225, A:L.255
LDA.8: 7 residues within 4Å:- Chain A: A.77, W.81, A.86, Y.87, F.88, W.132
- Ligands: LDA.10
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:W.81, A:W.81
LDA.9: 12 residues within 4Å:- Chain A: S.52, N.67, L.396, L.430, L.432, G.462, G.463, L.464, H.480, A.482
- Ligands: PE5.15, 78M.17
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:L.432, A:L.464, A:H.480
LDA.10: 10 residues within 4Å:- Chain A: F.131, F.148, G.149, E.166, A.167, L.168, V.183, Q.185, F.187
- Ligands: LDA.8
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:F.131, A:F.131, A:F.148, A:F.148, A:F.148, A:E.166
- Hydrogen bonds: A:V.183
- 5 x PE5: 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL(Non-covalent)
PE5.11: 11 residues within 4Å:- Chain A: Q.159, W.160, W.254, S.277, T.279, G.311, V.312, F.344, Q.346, T.347, L.374
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.277, A:T.347, A:T.347
PE5.12: 5 residues within 4Å:- Chain A: D.83, G.137, L.138, T.139, A.140
No protein-ligand interaction detected (PLIP)PE5.13: 9 residues within 4Å:- Chain A: Q.303, Q.343, R.403, D.407, S.408, D.409, L.419
- Ligands: PE5.14, MES.19
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.343, A:R.403, A:D.409
PE5.14: 13 residues within 4Å:- Chain A: T.247, Y.248, R.285, N.287, Q.343, Q.345, Q.346, G.348, E.350, E.373, S.375
- Ligands: PE5.13, MES.18
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:Q.343
- Hydrogen bonds: A:T.247, A:E.350
PE5.15: 7 residues within 4Å:- Chain A: S.52, N.54, T.65, L.66, N.67, H.480
- Ligands: LDA.9
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.54, A:N.67
- 2 x 78M: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE(Non-covalent)
78M.16: 2 residues within 4Å:- Chain A: W.280, N.308
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:W.280, A:W.280
78M.17: 11 residues within 4Å:- Chain A: G.50, E.51, S.52, N.67, V.434, K.436, I.458, R.459, F.460, V.484
- Ligands: LDA.9
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:F.460, A:F.460
- Hydrogen bonds: A:K.436, A:I.458
- 2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
MES.18: 9 residues within 4Å:- Chain A: E.189, R.204, L.244, D.245, K.246, T.247, Y.248, G.348
- Ligands: PE5.14
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:E.189, A:D.245, A:T.247, A:Y.248
- Salt bridges: A:R.204
MES.19: 11 residues within 4Å:- Chain A: T.290, T.291, D.409, I.410, T.412, I.415, N.416, A.417, A.418, L.419
- Ligands: PE5.13
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.290, A:T.291, A:L.419
- Salt bridges: A:D.409
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Huang, C.Y. et al., In meso in situ serial X-ray crystallography of soluble and membrane proteins at cryogenic temperatures. Acta Crystallogr D Struct Biol (2016)
- Release Date
- 2016-01-13
- Peptides
- Alginate production protein AlgE: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- monomer
- Ligands
- 2 x NA: SODIUM ION(Non-functional Binders)
- 1 x CA: CALCIUM ION(Non-covalent)
- 7 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)
- 5 x PE5: 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL(Non-covalent)
- 2 x 78M: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE(Non-covalent)
- 2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Huang, C.Y. et al., In meso in situ serial X-ray crystallography of soluble and membrane proteins at cryogenic temperatures. Acta Crystallogr D Struct Biol (2016)
- Release Date
- 2016-01-13
- Peptides
- Alginate production protein AlgE: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.