- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-24-mer
- Ligands
- 6 x K: POTASSIUM ION(Non-covalent)
- 50 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
PG4.2: 8 residues within 4Å:- Chain A: K.57, E.60, R.61, F.64, V.115, L.119
- Chain X: E.125, D.132
Ligand excluded by PLIPPG4.3: 9 residues within 4Å:- Chain A: E.125, E.128, E.129, D.132
- Chain B: E.60, R.61, F.64, V.115, L.119
Ligand excluded by PLIPPG4.4: 4 residues within 4Å:- Chain A: N.33, K.38
- Chain J: D.132, T.136
Ligand excluded by PLIPPG4.7: 4 residues within 4Å:- Chain B: N.33, K.38
- Chain C: D.132, T.136
Ligand excluded by PLIPPG4.9: 9 residues within 4Å:- Chain C: E.125, E.128, E.129, D.132
- Chain E: E.60, R.61, F.64, V.115, L.119
Ligand excluded by PLIPPG4.10: 4 residues within 4Å:- Chain C: N.33, K.38
- Chain G: D.132, T.136
Ligand excluded by PLIPPG4.12: 5 residues within 4Å:- Chain D: N.33, K.38
- Chain T: D.132, Y.133, T.136
Ligand excluded by PLIPPG4.14: 9 residues within 4Å:- Chain E: E.125, E.128, E.129, D.132
- Chain F: E.60, R.61, F.64, V.115, L.119
Ligand excluded by PLIPPG4.15: 5 residues within 4Å:- Chain A: D.132, T.136
- Chain E: N.33, D.34, K.38
Ligand excluded by PLIPPG4.16: 8 residues within 4Å:- Chain C: E.60, R.61, F.64, V.115, L.119
- Chain F: E.125, E.129, D.132
Ligand excluded by PLIPPG4.17: 5 residues within 4Å:- Chain D: D.132, T.136
- Chain F: N.33, K.38, E.156
Ligand excluded by PLIPPG4.19: 9 residues within 4Å:- Chain G: E.60, R.61, F.64, V.115, L.119
- Chain V: E.125, E.128, E.129, D.132
Ligand excluded by PLIPPG4.20: 9 residues within 4Å:- Chain G: E.125, E.128, E.129, D.132
- Chain I: E.60, R.61, F.64, V.115, L.119
Ligand excluded by PLIPPG4.21: 4 residues within 4Å:- Chain G: N.33, K.38
- Chain L: D.132, T.136
Ligand excluded by PLIPPG4.22: 9 residues within 4Å:- Chain D: E.60, R.61, F.64, V.115, L.119
- Chain H: E.125, E.128, E.129, D.132
Ligand excluded by PLIPPG4.23: 9 residues within 4Å:- Chain H: E.60, R.61, F.64, V.115, L.119
- Chain K: E.125, E.128, E.129, D.132
Ligand excluded by PLIPPG4.24: 4 residues within 4Å:- Chain H: N.33, K.38
- Chain U: D.132, T.136
Ligand excluded by PLIPPG4.25: 5 residues within 4Å:- Chain F: D.132, T.136
- Chain I: N.33, D.34, K.38
Ligand excluded by PLIPPG4.27: 9 residues within 4Å:- Chain J: E.60, R.61, F.64, V.115, L.119
- Chain U: E.125, E.128, E.129, D.132
Ligand excluded by PLIPPG4.28: 5 residues within 4Å:- Chain J: N.33, D.34, K.38
- Chain K: D.132, T.136
Ligand excluded by PLIPPG4.29: 5 residues within 4Å:- Chain A: W.35, E.81, N.82
- Chain J: Q.142, K.143
Ligand excluded by PLIPPG4.31: 9 residues within 4Å:- Chain D: E.125, E.128, E.129, D.132
- Chain K: E.60, R.61, F.64, V.115, L.119
Ligand excluded by PLIPPG4.32: 4 residues within 4Å:- Chain E: D.132, T.136
- Chain K: N.33, K.38
Ligand excluded by PLIPPG4.33: 9 residues within 4Å:- Chain L: E.60, R.61, F.64, V.115, L.119
- Chain N: E.125, E.128, E.129, D.132
Ligand excluded by PLIPPG4.34: 4 residues within 4Å:- Chain B: D.132, T.136
- Chain L: N.33, K.38
Ligand excluded by PLIPPG4.37: 8 residues within 4Å:- Chain L: E.125, D.132
- Chain M: K.57, E.60, R.61, F.64, V.115, L.119
Ligand excluded by PLIPPG4.38: 9 residues within 4Å:- Chain M: E.125, E.128, E.129, D.132
- Chain N: E.60, R.61, F.64, V.115, L.119
Ligand excluded by PLIPPG4.39: 4 residues within 4Å:- Chain M: N.33, K.38
- Chain V: D.132, T.136
Ligand excluded by PLIPPG4.42: 4 residues within 4Å:- Chain N: N.33, K.38
- Chain O: D.132, T.136
Ligand excluded by PLIPPG4.44: 9 residues within 4Å:- Chain O: E.125, E.128, E.129, D.132
- Chain Q: E.60, R.61, F.64, V.115, L.119
Ligand excluded by PLIPPG4.45: 4 residues within 4Å:- Chain O: N.33, K.38
- Chain S: D.132, T.136
Ligand excluded by PLIPPG4.47: 5 residues within 4Å:- Chain H: D.132, Y.133, T.136
- Chain P: N.33, K.38
Ligand excluded by PLIPPG4.49: 9 residues within 4Å:- Chain Q: E.125, E.128, E.129, D.132
- Chain R: E.60, R.61, F.64, V.115, L.119
Ligand excluded by PLIPPG4.50: 5 residues within 4Å:- Chain M: D.132, T.136
- Chain Q: N.33, D.34, K.38
Ligand excluded by PLIPPG4.51: 8 residues within 4Å:- Chain O: E.60, R.61, F.64, V.115, L.119
- Chain R: E.125, E.129, D.132
Ligand excluded by PLIPPG4.52: 5 residues within 4Å:- Chain P: D.132, T.136
- Chain R: N.33, K.38, E.156
Ligand excluded by PLIPPG4.54: 9 residues within 4Å:- Chain J: E.125, E.128, E.129, D.132
- Chain S: E.60, R.61, F.64, V.115, L.119
Ligand excluded by PLIPPG4.55: 9 residues within 4Å:- Chain S: E.125, E.128, E.129, D.132
- Chain U: E.60, R.61, F.64, V.115, L.119
Ligand excluded by PLIPPG4.56: 4 residues within 4Å:- Chain S: N.33, K.38
- Chain X: D.132, T.136
Ligand excluded by PLIPPG4.57: 9 residues within 4Å:- Chain P: E.60, R.61, F.64, V.115, L.119
- Chain T: E.125, E.128, E.129, D.132
Ligand excluded by PLIPPG4.58: 9 residues within 4Å:- Chain T: E.60, R.61, F.64, V.115, L.119
- Chain W: E.125, E.128, E.129, D.132
Ligand excluded by PLIPPG4.59: 4 residues within 4Å:- Chain I: D.132, T.136
- Chain T: N.33, K.38
Ligand excluded by PLIPPG4.60: 5 residues within 4Å:- Chain R: D.132, T.136
- Chain U: N.33, D.34, K.38
Ligand excluded by PLIPPG4.62: 9 residues within 4Å:- Chain I: E.125, E.128, E.129, D.132
- Chain V: E.60, R.61, F.64, V.115, L.119
Ligand excluded by PLIPPG4.63: 5 residues within 4Å:- Chain V: N.33, D.34, K.38
- Chain W: D.132, T.136
Ligand excluded by PLIPPG4.64: 5 residues within 4Å:- Chain M: W.35, E.81, N.82
- Chain V: Q.142, K.143
Ligand excluded by PLIPPG4.66: 9 residues within 4Å:- Chain P: E.125, E.128, E.129, D.132
- Chain W: E.60, R.61, F.64, V.115, L.119
Ligand excluded by PLIPPG4.67: 4 residues within 4Å:- Chain Q: D.132, T.136
- Chain W: N.33, K.38
Ligand excluded by PLIPPG4.68: 9 residues within 4Å:- Chain B: E.125, E.128, E.129, D.132
- Chain X: E.60, R.61, F.64, V.115, L.119
Ligand excluded by PLIPPG4.69: 4 residues within 4Å:- Chain N: D.132, T.136
- Chain X: N.33, K.38
Ligand excluded by PLIP- 14 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.5: 19 residues within 4Å:- Chain A: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59
- Chain S: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71
20 PLIP interactions:10 interactions with chain A, 10 interactions with chain S,- Hydrophobic interactions: A:L.19, A:I.22, A:F.26, A:F.26, A:I.49, A:I.49, A:M.52, A:A.55, A:I.59, S:L.19, S:I.22, S:F.26, S:F.26, S:I.49, S:M.52, S:L.71
- Salt bridges: A:K.53, S:K.53
- Water bridges: S:Y.45, S:K.53
HEM.8: 19 residues within 4Å:- Chain B: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59
- Chain E: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71
25 PLIP interactions:10 interactions with chain B, 15 interactions with chain E,- Hydrophobic interactions: B:L.19, B:I.22, B:F.26, B:F.26, B:I.49, B:M.52, B:A.55, B:I.59, E:L.19, E:I.22, E:I.22, E:F.26, E:F.26, E:F.26, E:I.49, E:I.49, E:M.52, E:L.71
- Water bridges: B:K.53, E:Y.45, E:K.53, E:K.53, E:K.53
- Salt bridges: B:K.53, E:K.53
HEM.13: 19 residues within 4Å:- Chain D: I.22, N.23, F.26, Y.45, I.49, M.52, K.53, I.59
- Chain P: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, L.71
- Ligands: HEM.48
20 PLIP interactions:13 interactions with chain P, 7 interactions with chain D,- Hydrophobic interactions: P:L.19, P:I.22, P:I.22, P:F.26, P:F.26, P:I.49, P:I.49, P:M.52, P:A.55, P:L.71, D:I.22, D:F.26, D:F.26, D:M.52, D:I.59
- Water bridges: P:Y.45, P:K.53, D:K.53
- Salt bridges: P:K.53, D:K.53
HEM.18: 19 residues within 4Å:- Chain F: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59
- Chain K: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71
23 PLIP interactions:11 interactions with chain F, 12 interactions with chain K,- Hydrophobic interactions: F:L.19, F:F.26, F:F.26, F:I.49, F:I.49, F:M.52, F:A.55, F:I.59, K:L.19, K:I.22, K:I.22, K:F.26, K:F.26, K:F.26, K:I.49, K:M.52, K:L.71
- Water bridges: F:K.53, F:K.53, K:Y.45, K:K.53
- Salt bridges: F:K.53, K:K.53
HEM.26: 18 residues within 4Å:- Chain C: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59
- Chain I: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53
21 PLIP interactions:10 interactions with chain I, 11 interactions with chain C,- Hydrophobic interactions: I:L.19, I:I.22, I:I.22, I:F.26, I:F.26, I:F.26, I:I.49, I:M.52, C:L.19, C:I.22, C:F.26, C:F.26, C:I.49, C:M.52, C:A.55, C:I.59
- Water bridges: I:K.53, C:K.53, C:K.53
- Salt bridges: I:K.53, C:K.53
HEM.30: 17 residues within 4Å:- Chain H: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, I.59
- Chain J: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53
17 PLIP interactions:10 interactions with chain J, 7 interactions with chain H,- Hydrophobic interactions: J:L.19, J:I.22, J:I.22, J:F.26, J:F.26, J:I.49, J:I.49, J:M.52, H:L.19, H:F.26, H:F.26, H:M.52, H:I.59
- Water bridges: J:K.53, H:K.53
- Salt bridges: J:K.53, H:K.53
HEM.35: 20 residues within 4Å:- Chain L: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59
- Chain X: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71
- Ligands: HEM.70
18 PLIP interactions:8 interactions with chain X, 10 interactions with chain L,- Hydrophobic interactions: X:L.19, X:F.26, X:Y.45, X:I.49, X:I.49, X:M.52, X:L.71, L:L.19, L:I.22, L:I.22, L:F.26, L:F.26, L:I.49, L:M.52, L:A.55, L:I.59
- Salt bridges: X:K.53, L:K.53
HEM.40: 19 residues within 4Å:- Chain G: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71
- Chain M: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59
20 PLIP interactions:10 interactions with chain M, 10 interactions with chain G,- Hydrophobic interactions: M:L.19, M:I.22, M:F.26, M:F.26, M:I.49, M:I.49, M:M.52, M:A.55, M:I.59, G:L.19, G:I.22, G:F.26, G:F.26, G:I.49, G:M.52, G:L.71
- Salt bridges: M:K.53, G:K.53
- Water bridges: G:Y.45, G:K.53
HEM.43: 19 residues within 4Å:- Chain N: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59
- Chain Q: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71
25 PLIP interactions:10 interactions with chain N, 15 interactions with chain Q,- Hydrophobic interactions: N:L.19, N:I.22, N:F.26, N:F.26, N:I.49, N:M.52, N:A.55, N:I.59, Q:L.19, Q:I.22, Q:I.22, Q:F.26, Q:F.26, Q:F.26, Q:I.49, Q:I.49, Q:M.52, Q:L.71
- Water bridges: N:K.53, Q:Y.45, Q:K.53, Q:K.53, Q:K.53
- Salt bridges: N:K.53, Q:K.53
HEM.48: 19 residues within 4Å:- Chain D: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, L.71
- Chain P: I.22, N.23, F.26, Y.45, I.49, M.52, K.53, I.59
- Ligands: HEM.13
20 PLIP interactions:7 interactions with chain P, 13 interactions with chain D,- Hydrophobic interactions: P:I.22, P:F.26, P:F.26, P:M.52, P:I.59, D:L.19, D:I.22, D:I.22, D:F.26, D:F.26, D:I.49, D:I.49, D:M.52, D:A.55, D:L.71
- Water bridges: P:K.53, D:Y.45, D:K.53
- Salt bridges: P:K.53, D:K.53
HEM.53: 19 residues within 4Å:- Chain R: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59
- Chain W: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71
23 PLIP interactions:11 interactions with chain R, 12 interactions with chain W,- Hydrophobic interactions: R:L.19, R:F.26, R:F.26, R:I.49, R:I.49, R:M.52, R:A.55, R:I.59, W:L.19, W:I.22, W:I.22, W:F.26, W:F.26, W:F.26, W:I.49, W:M.52, W:L.71
- Water bridges: R:K.53, R:K.53, W:Y.45, W:K.53
- Salt bridges: R:K.53, W:K.53
HEM.61: 18 residues within 4Å:- Chain O: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59
- Chain U: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53
21 PLIP interactions:11 interactions with chain O, 10 interactions with chain U,- Hydrophobic interactions: O:L.19, O:I.22, O:F.26, O:F.26, O:I.49, O:M.52, O:A.55, O:I.59, U:L.19, U:I.22, U:I.22, U:F.26, U:F.26, U:F.26, U:I.49, U:M.52
- Water bridges: O:K.53, O:K.53, U:K.53
- Salt bridges: O:K.53, U:K.53
HEM.65: 17 residues within 4Å:- Chain T: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, I.59
- Chain V: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53
17 PLIP interactions:10 interactions with chain V, 7 interactions with chain T,- Hydrophobic interactions: V:L.19, V:I.22, V:I.22, V:F.26, V:F.26, V:I.49, V:I.49, V:M.52, T:L.19, T:F.26, T:F.26, T:M.52, T:I.59
- Water bridges: V:K.53, T:K.53
- Salt bridges: V:K.53, T:K.53
HEM.70: 20 residues within 4Å:- Chain L: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, L.71
- Chain X: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, I.59
- Ligands: HEM.35
18 PLIP interactions:10 interactions with chain X, 8 interactions with chain L,- Hydrophobic interactions: X:L.19, X:I.22, X:I.22, X:F.26, X:F.26, X:I.49, X:M.52, X:A.55, X:I.59, L:L.19, L:F.26, L:Y.45, L:I.49, L:I.49, L:M.52, L:L.71
- Salt bridges: X:K.53, L:K.53
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, Y. et al., Characterization of the Bacterioferritin/Bacterioferritin Associated Ferredoxin Protein-Protein Interaction in Solution and Determination of Binding Energy Hot Spots. Biochemistry (2015)
- Release Date
- 2015-09-23
- Peptides
- Ferroxidase: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
LM
AN
BO
CP
DQ
ER
FS
GT
HU
IV
JW
KX
L
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-24-mer
- Ligands
- 6 x K: POTASSIUM ION(Non-covalent)
- 50 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 14 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, Y. et al., Characterization of the Bacterioferritin/Bacterioferritin Associated Ferredoxin Protein-Protein Interaction in Solution and Determination of Binding Energy Hot Spots. Biochemistry (2015)
- Release Date
- 2015-09-23
- Peptides
- Ferroxidase: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
LM
AN
BO
CP
DQ
ER
FS
GT
HU
IV
JW
KX
L