- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.06 Å
- Oligo State
- homo-10-mer
- Ligands
- 10 x FE: FE (III) ION(Non-covalent)
- 6 x GOA: GLYCOLIC ACID(Non-covalent)
GOA.2: 12 residues within 4Å:- Chain A: E.31, E.32, A.35, Y.39, E.62
- Chain J: E.31, E.32, A.35, E.62
- Ligands: FE.1, CA.3, FE.4
4 PLIP interactions:3 interactions with chain J, 1 interactions with chain A- Hydrogen bonds: J:E.32
- Water bridges: J:A.35, J:Y.39, A:A.35
GOA.8: 11 residues within 4Å:- Chain B: E.31, E.32, A.35, Y.39, E.62
- Chain C: E.31, E.32, A.35, E.62
- Ligands: FE.5, FE.7
4 PLIP interactions:1 interactions with chain C, 3 interactions with chain B- Water bridges: C:A.35, B:A.35, B:A.35
- Hydrogen bonds: B:E.31
GOA.9: 4 residues within 4Å:- Chain B: E.61, E.64
- Chain C: H.57, E.61
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:E.61
GOA.12: 11 residues within 4Å:- Chain D: E.31, E.32, A.35, E.62
- Chain E: E.31, E.32, A.35, Y.39, E.62
- Ligands: FE.11, FE.15
4 PLIP interactions:3 interactions with chain E, 1 interactions with chain D- Hydrogen bonds: E:E.31
- Water bridges: E:A.35, E:A.35, D:A.35
GOA.18: 12 residues within 4Å:- Chain F: E.31, E.32, A.35, E.62
- Chain H: E.31, E.32, A.35, Y.39, E.62
- Ligands: FE.17, FE.20, CA.21
3 PLIP interactions:3 interactions with chain H- Hydrogen bonds: H:E.31
- Water bridges: H:A.35, H:A.35
GOA.23: 13 residues within 4Å:- Chain G: E.31, E.32, A.35, Y.39, E.62
- Chain I: E.31, E.32, A.35, Y.39, E.62
- Ligands: FE.22, CA.24, FE.25
4 PLIP interactions:2 interactions with chain G, 2 interactions with chain I- Hydrogen bonds: G:E.32
- Water bridges: G:A.35, I:A.35, I:A.35
- 11 x CA: CALCIUM ION(Non-covalent)
CA.3: 5 residues within 4Å:- Chain A: E.31, E.34
- Chain J: E.31, E.34
- Ligands: GOA.2
5 PLIP interactions:2 interactions with chain A, 1 interactions with chain J, 2 Ligand-Water interactions- Metal complexes: A:E.31, A:E.34, J:E.31, H2O.1, H2O.13
CA.6: 4 residues within 4Å:- Chain B: E.31, E.34
- Chain C: E.31, E.34
5 PLIP interactions:1 interactions with chain C, 2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: C:E.31, B:E.31, B:E.34, H2O.2, H2O.3
CA.10: 1 residues within 4Å:- Chain C: D.44
2 PLIP interactions:1 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.44, H2O.4
CA.13: 3 residues within 4Å:- Chain D: H.57, E.61
- Chain E: E.64
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:E.61
CA.14: 4 residues within 4Å:- Chain D: E.31, E.34
- Chain E: E.31, E.34
5 PLIP interactions:1 interactions with chain E, 2 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: E:E.31, D:E.31, D:E.34, H2O.5, H2O.6
CA.16: 4 residues within 4Å:- Chain D: E.61, E.64
- Chain E: H.57, E.61
2 PLIP interactions:2 interactions with chain E- Metal complexes: E:E.61, E:E.61
CA.19: 1 residues within 4Å:- Chain F: D.44
4 PLIP interactions:1 interactions with chain F, 3 Ligand-Water interactions- Metal complexes: F:D.44, H2O.6, H2O.8, H2O.9
CA.21: 5 residues within 4Å:- Chain F: E.31, E.34
- Chain H: E.31, E.34
- Ligands: GOA.18
5 PLIP interactions:2 interactions with chain H, 1 interactions with chain F, 2 Ligand-Water interactions- Metal complexes: H:E.31, H:E.34, F:E.31, H2O.8, H2O.10
CA.24: 5 residues within 4Å:- Chain G: E.31, E.34
- Chain I: E.31, E.34
- Ligands: GOA.23
5 PLIP interactions:1 interactions with chain G, 2 interactions with chain I, 2 Ligand-Water interactions- Metal complexes: G:E.31, I:E.31, I:E.34, H2O.9, H2O.12
CA.26: 2 residues within 4Å:- Chain G: D.48
- Chain I: N.76
No protein-ligand interaction detected (PLIP)CA.27: 1 residues within 4Å:- Chain J: E.91
4 PLIP interactions:2 interactions with chain J, 2 Ligand-Water interactions- Metal complexes: J:E.91, J:E.91, H2O.13, H2O.14
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- He, D. et al., Structural characterization of encapsulated ferritin provides insight into iron storage in bacterial nanocompartments. Elife (2016)
- Release Date
- 2016-08-10
- Peptides
- Rru_A0973: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
J
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.06 Å
- Oligo State
- homo-10-mer
- Ligands
- 10 x FE: FE (III) ION(Non-covalent)
- 6 x GOA: GLYCOLIC ACID(Non-covalent)
- 11 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- He, D. et al., Structural characterization of encapsulated ferritin provides insight into iron storage in bacterial nanocompartments. Elife (2016)
- Release Date
- 2016-08-10
- Peptides
- Rru_A0973: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
J