SMTL ID : 5dav.1

Fe(II)/(alpha)ketoglutarate-dependent dioxygenase AsqJ in complex with 4-Methoxydehydrocyclopeptin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 4 residues within 4Å: Chain A: H.134, D.136, H.211 Ligands: TRS.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.134, A:D.136, A:H.211 NI.7: 4 residues within 4Å: Chain B: H.134, D.136, H.211 Ligands: TRS.9 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.134, B:D.136, B:H.211

2 x 58J: 4-Methoxydehydrocyclopeptin(Non-covalent)

58J.2: 16 residues within 4Å: Chain A: N.70, V.72, L.73, L.79, M.118, M.122, Q.131, P.132, H.134, D.136, M.137, F.139, T.227 Chain B: I.273 Ligands: TRS.3, K.6 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.72, A:L.73, A:L.79, A:F.139, A:T.227 Hydrogen bonds: A:N.70, A:M.137 Water bridges: A:R.138, A:F.139, A:S.140 pi-Stacking: A:H.134 58J.8: 16 residues within 4Å: Chain A: I.273 Chain B: N.70, V.72, L.73, L.79, M.118, M.122, Q.131, P.132, H.134, D.136, M.137, F.139, T.227 Ligands: TRS.9, K.12 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:V.72, B:L.73, B:L.79, B:F.139, B:T.227 Hydrogen bonds: B:N.70, B:M.137 Water bridges: B:R.138, B:F.139, B:S.140 pi-Stacking: B:H.134

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 10 residues within 4Å: Chain A: M.122, Q.131, H.134, D.136, N.157, L.159, H.211, G.213 Ligands: NI.1, 58J.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.131, A:D.136, A:N.157, A:G.213 TRS.9: 10 residues within 4Å: Chain B: M.122, Q.131, H.134, D.136, N.157, L.159, H.211, G.213 Ligands: NI.7, 58J.8 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.131, B:D.136, B:N.157, B:G.213

4 x BR: BROMIDE ION(Non-covalent)

BR.4: 4 residues within 4Å: Chain A: T.172, G.213, R.223, L.225 Ligand excluded by PLIP BR.5: 3 residues within 4Å: Chain A: S.74, T.77, Q.131 Ligand excluded by PLIP BR.10: 4 residues within 4Å: Chain B: T.172, G.213, R.223, L.225 Ligand excluded by PLIP BR.11: 3 residues within 4Å: Chain B: S.74, T.77, Q.131 Ligand excluded by PLIP

2 x K: POTASSIUM ION(Non-covalent)

K.6: 3 residues within 4Å: Chain A: H.134, F.139 Ligands: 58J.2 No protein-ligand interaction detected (PLIP) K.12: 3 residues within 4Å: Chain B: H.134, F.139 Ligands: 58J.8 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brauer, A. et al., Structure of the Dioxygenase AsqJ: Mechanistic Insights into a One-Pot Multistep Quinolone Antibiotic Biosynthesis. Angew.Chem.Int.Ed.Engl. (2016)

Release Date

2015-11-25

Peptides

Phytanoyl-CoA dioxygenase family protein (AFU_orthologue AFUA_8G00230): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Phytanoyl-CoA dioxygenase family protein (AFU_orthologue AFUA_8G00230)

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