SMTL ID : 5daw.1

Fe(II)/(alpha)ketoglutarate-dependent dioxygenase AsqJ in complex with cyclopeptin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 4 residues within 4Å: Chain A: H.134, D.136, H.211 Ligands: AKG.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.134, A:D.136, A:H.211, H2O.1 NI.4: 4 residues within 4Å: Chain B: H.134, D.136, H.211 Ligands: AKG.5 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.134, B:D.136, B:H.211, H2O.12

2 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.2: 12 residues within 4Å: Chain A: L.73, M.122, Q.131, H.134, D.136, T.172, H.211, G.213, R.223, L.225 Ligands: NI.1, 58K.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.131 Water bridges: A:Q.131, A:N.157, A:R.223 Salt bridges: A:H.134, A:R.223 AKG.5: 12 residues within 4Å: Chain B: L.73, M.122, Q.131, H.134, D.136, T.172, H.211, G.213, R.223, L.225 Ligands: NI.4, 58K.6 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Q.131 Water bridges: B:Q.131, B:N.157, B:R.223 Salt bridges: B:H.134, B:R.223

2 x 58K: cyclopeptin(Non-covalent)

58K.3: 15 residues within 4Å: Chain A: N.70, V.72, L.73, L.79, M.118, M.122, Q.131, P.132, H.134, D.136, M.137, F.139, T.227 Chain B: I.273 Ligands: AKG.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.72, A:L.73, A:L.79, A:H.134, A:F.139 Hydrogen bonds: A:N.70, A:M.137 Water bridges: A:R.138, A:F.139 pi-Stacking: A:H.134 58K.6: 15 residues within 4Å: Chain A: I.273 Chain B: N.70, V.72, L.73, L.79, M.118, M.122, Q.131, P.132, H.134, D.136, M.137, F.139, T.227 Ligands: AKG.5 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:V.72, B:L.73, B:L.79, B:H.134, B:F.139 Hydrogen bonds: B:N.70, B:M.137 Water bridges: B:R.138, B:F.139 pi-Stacking: B:H.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brauer, A. et al., Structure of the Dioxygenase AsqJ: Mechanistic Insights into a One-Pot Multistep Quinolone Antibiotic Biosynthesis. Angew.Chem.Int.Ed.Engl. (2016)

Release Date

2015-11-25

Peptides

Phytanoyl-CoA dioxygenase family protein (AFU_orthologue AFUA_8G00230): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Phytanoyl-CoA dioxygenase family protein (AFU_orthologue AFUA_8G00230)

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