SMTL ID : 5dbi.2 (1 other biounit)

Crystal Structure of Iridoid Synthase from Cantharanthus roseus in complex with NAD+ and 10-oxogeranial

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 28 residues within 4Å: Chain A: G.11, V.12, T.13, G.14, I.15, A.40, R.41, C.58, D.59, V.60, S.61, V.82, S.83, W.84, M.96, Q.117, T.118, G.119, F.152, Y.153, P.176, A.177, V.179, S.186, M.187, M.188, F.317 Ligands: XOG.2 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:V.179 Hydrogen bonds: A:G.11, A:T.13, A:T.13, A:T.13, A:G.14, A:I.15, A:R.41, A:D.59, A:V.60, A:S.61, A:Q.117, A:Q.117, A:V.179, A:M.187, A:M.188 Water bridges: A:V.16, A:V.16, A:Y.153 NAD.3: 28 residues within 4Å: Chain B: G.11, V.12, T.13, G.14, I.15, A.40, R.41, C.58, D.59, V.60, S.61, V.82, S.83, W.84, M.96, Q.117, T.118, G.119, F.152, Y.153, P.176, A.177, V.179, S.186, M.187, M.188, F.317 Ligands: XOG.4 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:V.179 Hydrogen bonds: B:G.11, B:T.13, B:T.13, B:T.13, B:G.14, B:I.15, B:R.41, B:D.59, B:D.59, B:V.60, B:S.61, B:Q.117, B:Q.117, B:Y.153, B:V.179, B:M.187, B:M.188 Water bridges: B:V.16, B:V.16, B:Y.153

2 x XOG: (2E,6E)-2,6-dimethylocta-2,6-dienedial(Non-covalent)

XOG.2: 10 residues within 4Å: Chain A: G.119, I.120, K.121, Y.153, L.178, M.188, F.317, I.320, A.321 Ligands: NAD.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.120, A:K.121, A:F.317, A:I.320 Hydrogen bonds: A:K.121, A:Y.153 XOG.4: 10 residues within 4Å: Chain B: G.119, I.120, K.121, Y.153, L.178, M.188, F.317, I.320, A.321 Ligands: NAD.3 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:I.120, B:K.121, B:F.317, B:I.320 Hydrogen bonds: B:K.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, Y.M. et al., Structures of Iridoid Synthase from Cantharanthus roseus with Bound NAD(+) , NADPH, or NAD(+) /10-Oxogeranial: Reaction Mechanisms. Angew.Chem.Int.Ed.Engl. (2015)

Release Date

2015-11-04

Peptides

Iridoid synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

Iridoid synthase

Related Entries With Identical Sequence