SMTL ID : 5ddk.1

Succinyl-CoA:acetate CoA-transferase (AarCH6-N347A) in complex with CoA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.13 Å

Oligo State

homo-dimer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: N.112, R.120, N.125 Chain B: G.443 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: I.195, V.196, R.354 Chain B: R.354 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain A: G.443 Chain B: N.112, R.120, N.125 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain A: R.354 Chain B: V.196, R.354 Ligand excluded by PLIP

2 x COA: COENZYME A(Non-covalent)

COA.3: 24 residues within 4Å: Chain A: F.92, Q.267, G.269, V.270, G.271, N.272, V.273, E.294, N.361, G.362, M.363, I.364, S.374, V.377, M.383, N.384, G.385, I.386, G.387, G.388, S.389, P.404, A.407, I.412 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:F.92 Hydrogen bonds: A:N.272, A:N.272, A:G.362, A:I.364, A:N.384, A:G.388, A:S.389 Water bridges: A:V.270, A:V.270, A:A.274, A:G.385, A:S.389, A:S.389, A:K.408, A:K.408 Salt bridges: A:K.408 COA.9: 24 residues within 4Å: Chain B: F.92, Q.267, G.269, V.270, G.271, N.272, V.273, E.294, N.361, G.362, M.363, I.364, S.374, V.377, M.383, N.384, G.385, I.386, G.388, S.389, P.404, A.407, K.408, I.412 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:F.92, B:V.270 Hydrogen bonds: B:N.272, B:N.272, B:V.273, B:I.364, B:N.384, B:S.389, B:K.408 Water bridges: B:A.274, B:E.294, B:E.294, B:G.362, B:G.362, B:M.363, B:S.389, B:S.389 Salt bridges: B:K.408

3 x IMD: IMIDAZOLE(Non-covalent)

IMD.4: 6 residues within 4Å: Chain A: L.486, T.487 Chain B: T.487, L.490, S.491, Q.494 1 PLIP interactions: 1 interactions with chain B Water bridges: B:L.490 IMD.5: 6 residues within 4Å: Chain A: T.487, L.490, S.491, Q.494 Chain B: L.486, T.487 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Water bridges: B:L.486, B:T.487, A:L.490 IMD.6: 7 residues within 4Å: Chain A: M.418, A.419, A.420, V.422 Chain B: M.418, A.419, V.422 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Water bridges: B:A.419, A:A.419 Hydrogen bonds: A:A.419

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Murphy, J.R. et al., Functional Dissection of the Bipartite Active Site of the Class I Coenzyme A (CoA)-Transferase Succinyl-CoA:Acetate CoA-Transferase. Front Chem (2016)

Release Date

2016-05-04

Peptides

Acetyl-CoA hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Acetyl-CoA hydrolase